Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001314-TA|BGIBMGA001314-PA|undefined
         (188 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26310.1 68416.m03283 cytochrome P450 family protein contains...    30   0.84 
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    29   1.9  
At1g07620.1 68414.m00817 GTP1/OBG family protein similar to SP|P...    28   3.4  
At5g58160.1 68418.m07280 formin homology 2 domain-containing pro...    28   4.5  
At3g42770.1 68416.m04468 F-box family protein contains F-box dom...    28   4.5  
At3g18320.1 68416.m02331 F-box family protein contains Pfam PF00...    27   5.9  
At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam pro...    27   5.9  

>At3g26310.1 68416.m03283 cytochrome P450 family protein contains
          Pfam profile: PF00067 cytochrome P450
          Length = 500

 Score = 30.3 bits (65), Expect = 0.84
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 37 SHFVMISLVVAYCILGAVIFEKLEAEHEKDVRIVCTYHFYVKMNISQIRKNTTQSIWTMT 96
          +H  ++ L+   CIL AV   K   +H K  +  C   F +  N+ QI +   Q++W ++
Sbjct: 2  AHIWLLPLIFLVCILLAVFNHK---KHPKYRQFPCPPGFPIIGNLHQIGELPHQTLWKLS 58

Query: 97 K 97
          K
Sbjct: 59 K 59


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 6/85 (7%)

Query: 52   GAVIFEKLEAEHEKDVRIVCT----YHFYVKMNISQIRKNTTQSIWTMTKSVPLFNHT-- 105
            G  I E+  A+     ++  T    +  +++MN S++  N  Q +W + +S PL   T  
Sbjct: 2445 GGSIVEEFNAQMRAVSKVALTRKSNFSVFLEMNGSEVVDNLMQVLWGILESEPLDTPTMN 2504

Query: 106  NWTSSTVDMLKDFENAILLEMKVRG 130
            N   S+V+++  +   +  + K  G
Sbjct: 2505 NVVMSSVELIYSYAECLASQGKDTG 2529


>At1g07620.1 68414.m00817 GTP1/OBG family protein similar to
           SP|P20964 Spo0B-associated GTP-binding protein {Bacillus
           subtilis}; contains Pfam profile PF01018: GTP1/OBG
           family
          Length = 1016

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/55 (30%), Positives = 25/55 (45%)

Query: 129 RGWDGNESTHHIQWTFTGALFYSIIVITTIAGYSAIVVYEFSIEYKPGLSGHTAS 183
           RG D      H  W F+G   + + V  T+  +S  + +E   E K G +GH  S
Sbjct: 589 RGGDVILECTHAVWDFSGLQPHIVSVSVTLFVFSGNMSHENFSELKGGKAGHGTS 643


>At5g58160.1 68418.m07280 formin homology 2 domain-containing
           protein / FH2 domain-containing protein low similarity
           to SP|Q05858 Formin (Limb deformity protein) {Gallus
           gallus}; contains Pfam profile PF02181: Formin Homology
           2(FH2) Domain
          Length = 1307

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/58 (25%), Positives = 21/58 (36%)

Query: 79  MNISQIRKNTTQSIWTMTKSVPLFNHTNWTSSTVDMLKDFENAILLEMKVRGWDGNES 136
           MN S + +     I   +K    FN  +W   T      F+   +      G DGN S
Sbjct: 346 MNFSSLEEKDGLPIEVFSKVHEFFNQVDWVDQTDATRNMFQQLAIANAVQEGLDGNSS 403


>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 532

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 10/72 (13%)

Query: 117 DFENAILLEMKVRGWDGNESTHHIQWTFTGALFYSIIVITTIAGYSAIVVYEFSIEYKPG 176
           DF+N++LL+ K R W    +  +IQ +F G       V +T+A      +  FS+++K  
Sbjct: 42  DFDNSLLLQSKKRKW----NMRNIQKSFVG------FVDSTLALQGGKGIKSFSLKFKET 91

Query: 177 LSGHTASVAILR 188
           L      V + R
Sbjct: 92  LGDVNGEVDVNR 103


>At3g18320.1 68416.m02331 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640: F-box
           protein interaction domain; similar to F-box protein
           family, AtFBX9 (GI0197985){Arabidopsis thaliana]
          Length = 299

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 112 VDMLKDFENAILLEMKVRGWDGNESTHHIQWTFTGALFYSI-IVITTIAGYSAIVV 166
           +  L D E  +LL  K +GW   E   ++        F  +   + TI GYS I+V
Sbjct: 224 LSFLLDEEKKVLLCCKSKGWMKEEDEDNVYIVGEDTKFILLNFGVQTIGGYSPIIV 279


>At2g15240.1 68415.m01738 UNC-50 family protein contains Pfam
           profile PF05216: UNC-50 family; contains 5 transmembrane
           domains; similar to inner nuclear membrane RNA-binding
           protein unc-50 related protein (GI:2735550) [Rattus
           norvegicus]
          Length = 252

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 33  SVVFSHFVMISLVVAYC---ILGAVIFEKLEAEHEKDVRIVCTYHFYVKMN 80
           SV+F+HF++   V+A C   +  + + E+    H  + R+   Y F V  N
Sbjct: 106 SVLFTHFLITGAVIATCCWFLTNSYLREETPNSHVVEQRVEWLYTFDVHCN 156


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.135    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,477,200
Number of Sequences: 28952
Number of extensions: 166963
Number of successful extensions: 507
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 7
length of query: 188
length of database: 12,070,560
effective HSP length: 77
effective length of query: 111
effective length of database: 9,841,256
effective search space: 1092379416
effective search space used: 1092379416
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)