GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001314-TA|BGIBMGA001314-PA|undefined
         (188 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   1.2  
AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory recept...    22   2.7  
AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory recept...    22   2.7  
AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory recept...    22   2.7  

>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 10/30 (33%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 100 PLFNHTNWTSSTVDMLKDFENAILLEMKVR 129
           PLF +  WT   +++LK +++   L  K+R
Sbjct: 117 PLFLN-EWTKIEINLLKHYQSTTDLHKKIR 145


>AM292351-1|CAL23163.2|  394|Tribolium castaneum gustatory receptor
           candidate 30 protein.
          Length = 394

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%)

Query: 140 IQWTFTGALFYSII--VITTIAGYSAIVVYE 168
           ++  FTG  F+SI   +I +IAG  AIV YE
Sbjct: 341 LEVAFTGKNFFSITRGLILSIAG--AIVSYE 369


>AM292350-1|CAL23162.2|  429|Tribolium castaneum gustatory receptor
           candidate 29 protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%)

Query: 140 IQWTFTGALFYSII--VITTIAGYSAIVVYE 168
           ++  FTG  F+SI   +I +IAG  AIV YE
Sbjct: 376 LEVAFTGKNFFSITRGLILSIAG--AIVSYE 404


>AM292328-1|CAL23140.2|  429|Tribolium castaneum gustatory receptor
           candidate 7 protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 2.7
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 4/31 (12%)

Query: 140 IQWTFTGALFYSII--VITTIAGYSAIVVYE 168
           ++  FTG  F+SI   +I +IAG  AIV YE
Sbjct: 376 LEVAFTGKNFFSITRGLILSIAG--AIVSYE 404


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.324    0.135    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,964
Number of Sequences: 317
Number of extensions: 1919
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 4
length of query: 188
length of database: 114,650
effective HSP length: 53
effective length of query: 135
effective length of database: 97,849
effective search space: 13209615
effective search space used: 13209615
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 41 (20.6 bits)