GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001314-TA|BGIBMGA001314-PA|undefined
         (188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    27   2.3  
SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyce...    26   3.0  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    26   3.0  
SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase G...    26   4.0  
SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   7.0  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.0  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   9.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.2  

>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 10/37 (27%), Positives = 21/37 (56%)

Query: 7   RSDRIEYPAPPPSKCAKFLYYTWKLCSVVFSHFVMIS 43
           RS+ I++P PP + C K   +   + +  ++ F ++S
Sbjct: 443 RSNSIDFPTPPKALCPKLFCFRDDIVADDYTKFSLLS 479


>SPBC83.15 |||ribosome biogenesis protein Nsa1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 17/97 (17%)

Query: 53  AVIFEKL-EAEHEKDVRIVCTYHFYVKMNISQIRKNTTQSIWTMTKSVPLFNHTNWTSST 111
           A + +K  E + EK V  +  +    +MN+   RKN T   W + +  P+ +      S+
Sbjct: 30  APVIQKFGELDREKGVLFMLKH----EMNVFVARKNGTIECWNVNQEPPILSSLWQLDSS 85

Query: 112 VDMLKDFENAILLEMKV-RGW------DGNESTHHIQ 141
           +      E A ++ MK   GW      DGN    HI+
Sbjct: 86  L-----LETASIVSMKYSNGWLMLALSDGNLLFRHIE 117


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 10  RIEYPAPPPSKCAKFLYYTWKLCSVVFSHFVMISLVVAYCILGAVIFE 57
           R+++P  P + C KFL    ++CS+   H+      +A  + G  +F+
Sbjct: 522 RLDFPERPGALC-KFLRSIKEVCSISLFHYRNCGGDIASVLAGLRVFD 568


>SPAPB1E7.05 |gde1||glycerophosphoryl diester phosphodiesterase
           Gde1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1076

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 60  EAEHEKDVRIVCTYHFYVKMNISQIRK 86
           EAE EK + I   Y+FYV   +S I+K
Sbjct: 918 EAEEEKLLPIAYDYNFYVDTILSIIKK 944


>SPBC947.10 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 16/63 (25%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 33  SVVFSHFVMISLVVAYCILGAVIFEKLEAEHEKDVRIVCTYHFYVKMNISQIRKNTTQSI 92
           S V   F  I LVV    L +  +  +   +     I  +Y F++   I  +++ T++S 
Sbjct: 462 SAVCLRFYFIILVVCIASLYSAFWPVIYRFYFISALIFTSYSFWIPQIIQNVKQGTSRSF 521

Query: 93  -WT 94
            WT
Sbjct: 522 TWT 524


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)

Query: 79  MNISQIRKNTTQSIWTMTKSVPLFNHTNWTSST 111
           +N + +  NTT   W  T S+     TN TSS+
Sbjct: 342 INSASMSSNTTYFYWNSTSSLSSSVFTNTTSSS 374


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)

Query: 130 GWDGNESTHHIQWTFTGALFYS 151
           GW G ES H I     G LFY+
Sbjct: 417 GWTGRESVHWIV-PIVGTLFYA 437


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 4/41 (9%)

Query: 55  IFEKLEAEHEKDVRIVCTYHFYVKMNISQIRKNTTQSIWTM 95
           I ++++   EK V +  TYHF   +N+ Q+R    Q IW M
Sbjct: 149 ILKRIDFFIEKVVEVPPTYHFLSLLNV-QLR---IQPIWWM 185


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.135    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 876,991
Number of Sequences: 5004
Number of extensions: 33700
Number of successful extensions: 118
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 8
length of query: 188
length of database: 2,362,478
effective HSP length: 69
effective length of query: 119
effective length of database: 2,017,202
effective search space: 240047038
effective search space used: 240047038
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 51 (24.6 bits)