GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001314-TA|BGIBMGA001314-PA|undefined
         (188 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0157 + 1109499-1111022                                           29   3.1  
04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334     28   5.4  
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731...    28   5.4  

>07_01_0157 + 1109499-1111022
          Length = 507

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 3/44 (6%)

Query: 77  VKMNISQIRKNTTQSIWTMTKSVPLFNHTNWTSSTVDMLKDFEN 120
           VK++ + +R+ T +      K+  L  H +WT S +D++ DF N
Sbjct: 432 VKVSKNMLRQRTIRGA---KKAKLLRRHDHWTQSRIDVISDFLN 472


>04_03_0452 - 16052449-16052856,16053017-16053321,16053383-16054334
          Length = 554

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 77  VKMNISQIRKNTTQSIWTMTKSVPLFNHTNWTSSTVDMLKDFENAI 122
           V  N+SQ+   +T  +WT    +    +T    ST  ++   ENA+
Sbjct: 10  VNTNLSQVFPASTMLVWTQVGEIVFPVYTTMPISTCPLMTGNENAV 55


>03_02_0917 +
           12372122-12372422,12372487-12372524,12373103-12373186,
           12373796-12374504,12374641-12374729,12374834-12374903,
           12374977-12375060,12375097-12375239,12375337-12375418,
           12375605-12375687,12375769-12375835,12376287-12376376,
           12377631-12377737,12377862-12377969
          Length = 684

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 4/39 (10%)

Query: 133 GNESTHHIQWTFTGALFYSIIVITTIAGYSAIVVYEFSI 171
           G E+T  + W+F   +F+ ++    +AG  A  VY++ +
Sbjct: 614 GKEATSAVGWSFLWVIFFGLV----LAGVGAYAVYKYRL 648


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.135    0.422 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,462,434
Number of Sequences: 37544
Number of extensions: 197544
Number of successful extensions: 538
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 537
Number of HSP's gapped (non-prelim): 3
length of query: 188
length of database: 14,793,348
effective HSP length: 78
effective length of query: 110
effective length of database: 11,864,916
effective search space: 1305140760
effective search space used: 1305140760
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)