Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001314-TA|BGIBMGA001314-PA|undefined
(188 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.084
SB_41449| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.34
SB_36905| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.45
SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15) 29 2.4
SB_28344| Best HMM Match : Ion_trans_2 (HMM E-Value=5.9e-38) 29 3.2
SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13) 28 4.2
SB_22485| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_9307| Best HMM Match : Ion_trans_2 (HMM E-Value=1.8e-14) 28 4.2
SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066) 27 7.3
>SB_6697| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 595
Score = 33.9 bits (74), Expect = 0.084
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 86 KNTTQSIWTMTKSVPLFNHTNWTSSTVDMLKDFENAILLEMKVRGWDGNES-THHIQWTF 144
KN Q + +++ + + N T++ + D + L + G N HH QW
Sbjct: 88 KNEEQELRVLSEKLETLSAENSTATFGSLKTDKQRQFLYDFCSHGLALNPGGEHHYQWDL 147
Query: 145 TGALFYSIIVITTIA-GYSAIVVYEFSIEYKP 175
G+ +++ VITT+ G +A V + + P
Sbjct: 148 AGSFYFAGTVITTVGFGLTAPVTRAGKLFFLP 179
>SB_41449| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 807
Score = 31.9 bits (69), Expect = 0.34
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 5/110 (4%)
Query: 78 KMNISQIRKNTTQSIWTMTKSVPLFNHTNWTSSTVDMLKDFENAILLEMKVRGWDGNEST 137
K+++ Q+ KN WT+ +H + ST D DFE+ L EM R E
Sbjct: 551 KVSVYQV-KNPKAGAWTLVVPSIAGHHEYFVKSTSDTNIDFEHYFLFEMTSRKRGKIERA 609
Query: 138 H-HIQWTFTGALFYSIIVITTIAGYSAIVVYEFSIEYKPGLSGHTASVAI 186
+ ++ G SI ++ T+AG + ++E GH V +
Sbjct: 610 ELPLSYSLKGR---SIKLVITVAGADKVNRETVTLELINKQGGHVRDVPL 656
>SB_36905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 563
Score = 31.5 bits (68), Expect = 0.45
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 121 AILLEMKVRGWDGNESTHHIQWTFTGALFYSIIVITTIA 159
AILL M +RGW G + +H +T+ ALF S+ I ++
Sbjct: 489 AILL-MDLRGWRGQQISHTTSFTYARALFSSLPPIAHVS 526
>SB_47097| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 323
Score = 31.5 bits (68), Expect = 0.45
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Query: 27 YTWKLCSVVFSHFVMISLVVAYCILGAVIFEKLEAEHEKDVRIVCTYHFYVKMNISQIRK 86
Y W CS+V I L+V Y + V ++++ A HE V + H ++ ++ RK
Sbjct: 190 YMWLGCSIVTIAIPFIVLIVCYANIAKVTWKQVRAIHESSVH---STHDGLRREVASNRK 246
Query: 87 NTTQSI 92
++
Sbjct: 247 TAVTAV 252
>SB_51462| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-15)
Length = 930
Score = 29.1 bits (62), Expect = 2.4
Identities = 11/18 (61%), Positives = 16/18 (88%)
Query: 141 QWTFTGALFYSIIVITTI 158
+W++TG+LF+S VITTI
Sbjct: 479 KWSYTGSLFFSGTVITTI 496
>SB_28344| Best HMM Match : Ion_trans_2 (HMM E-Value=5.9e-38)
Length = 354
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/25 (48%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
Query: 141 QWTFTGALFYSIIVITTIAGYSAIV 165
QW+F G+++++ VITTI GY V
Sbjct: 113 QWSFAGSVYFATTVITTI-GYGHTV 136
Score = 27.5 bits (58), Expect = 7.3
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 137 THHIQWTFTGALFYSIIVITTIAGYSAIVVYEFS 170
TH+ +W + +L+Y I +TTI G+ V + S
Sbjct: 217 THYEKWDYFHSLYYCFITVTTI-GFGDYVALQDS 249
>SB_36609| Best HMM Match : Ion_trans_2 (HMM E-Value=1.7e-13)
Length = 661
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 116 KDFENAILLEMKVRGWDGNESTHHIQWTFTGALFYSIIVITTI 158
KD N + E+ +G ++ +W+F G+LF++ V+TTI
Sbjct: 200 KDMRN-LFKEISKAIDEGYFDVNYDRWSFAGSLFFTGTVVTTI 241
>SB_22485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 519
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 139 HIQWTFTGALFYSIIVITTIAGYSAIVVYEFSIEYKPG 176
+I++ T FY I+VI + AI+ Y EY+PG
Sbjct: 134 NIKYRITKRRFYIIMVIVYVVSAWAILPYMIFQEYQPG 171
>SB_9307| Best HMM Match : Ion_trans_2 (HMM E-Value=1.8e-14)
Length = 483
Score = 28.3 bits (60), Expect = 4.2
Identities = 14/63 (22%), Positives = 34/63 (53%)
Query: 23 KFLYYTWKLCSVVFSHFVMISLVVAYCILGAVIFEKLEAEHEKDVRIVCTYHFYVKMNIS 82
K L+ + + +V + + +SL +Y +GA++F ++E EK+ + V+ ++
Sbjct: 67 KQLFVLFIMKTVWKTWLIRVSLFYSYGFVGALVFHQVEKREEKNASVAERLFDIVESLLA 126
Query: 83 QIR 85
++R
Sbjct: 127 ELR 129
>SB_25301| Best HMM Match : GTP_EFTU_D2 (HMM E-Value=0.066)
Length = 177
Score = 27.5 bits (58), Expect = 7.3
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Query: 100 PLFNHTNWTSSTVDMLKDFENAILLEMKVRGWDGNESTHHIQWTFT 145
P+F +N T +D+LK F N LL ++V D S I T++
Sbjct: 71 PIFQVSNVTGENLDLLKMFLN--LLSVRVESKDEEPSEFQIDDTYS 114
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.324 0.135 0.422
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,362,258
Number of Sequences: 59808
Number of extensions: 227376
Number of successful extensions: 780
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 766
Number of HSP's gapped (non-prelim): 15
length of query: 188
length of database: 16,821,457
effective HSP length: 78
effective length of query: 110
effective length of database: 12,156,433
effective search space: 1337207630
effective search space used: 1337207630
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 57 (27.1 bits)
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