Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001313-TA|BGIBMGA001313-PA|IPR005829|Sugar transporter
superfamily, IPR007114|Major facilitator superfamily, IPR011701|Major
facilitator superfamily MFS_1
         (549 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    27   0.34 
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   5.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   5.5  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 27.1 bits (57), Expect = 0.34
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 98  VPLTQPCSADTSFSQEALACDH 119
           VPL Q C+A   F +E L CD+
Sbjct: 448 VPLEQRCNAGLVFDEEKLWCDY 469


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 454 TSELFPTRARHSLLAFCSMV---GRIGSIVAP 482
           +S +FP   R + + FC ++   G IG+++ P
Sbjct: 59  SSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVP 90


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/32 (31%), Positives = 19/32 (59%), Gaps = 3/32 (9%)

Query: 454 TSELFPTRARHSLLAFCSMV---GRIGSIVAP 482
           +S +FP   R + + FC ++   G IG+++ P
Sbjct: 59  SSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVP 90


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.326    0.139    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,344
Number of Sequences: 317
Number of extensions: 4356
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12
Number of HSP's gapped (non-prelim): 3
length of query: 549
length of database: 114,650
effective HSP length: 60
effective length of query: 489
effective length of database: 95,630
effective search space: 46763070
effective search space used: 46763070
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 45 (22.2 bits)