Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001312-TA|BGIBMGA001312-PA|undefined
         (338 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    30   0.54 
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    29   0.71 
SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    28   2.2  
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces...    27   3.8  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   5.0  
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   5.0  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    26   6.7  

>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 29.9 bits (64), Expect = 0.54
 Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 26  KKAVELAQQLKSRSPQHESLAHFLIG-EGKLEAYLDEWPPIKENIERAQRELSEARGYLT 84
           K  VE A++++    Q  ++A    G EG+L +  D     KE +E     L E+  Y+ 
Sbjct: 447 KLTVERARKVQRFLSQPFAVAEVFTGIEGRLVSLKDTIRSFKEILEGKHDSLPESAFYMV 506

Query: 85  LATDEAGKKA 94
            + D+A KKA
Sbjct: 507 GSIDDAVKKA 516


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 29.5 bits (63), Expect = 0.71
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 78   EARGYLTLATDEAGKKAGVALD--AQLLLGKLNYACGSYDEALKHYKLAELNTLTEKELP 135
            E    + LA D  G  A ++ D  A  +LGK    CG  + AL H++ A     T+    
Sbjct: 1208 EVSKVIALAADYFGMSAELSNDWRALYMLGKACRKCGDMENALVHFEAAAALAPTKSGSG 1267

Query: 136  VRSLRIVAESYAI 148
             +   ++   YA+
Sbjct: 1268 SQQALLIEPHYAL 1280


>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 34/140 (24%), Positives = 62/140 (44%), Gaps = 9/140 (6%)

Query: 1   MTSKSKNAVRGFETEIDKSREEAN--WKKAVELAQQLKSRSPQHESLAHFLIGEGKLEAY 58
           +  KSK       + I+K   E+    K+A +   Q KSR P+   + +    + K+ A 
Sbjct: 4   LKKKSKRRTTRLRSRIEKKAAESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYKDKILAE 63

Query: 59  LDEWPPIKENIERAQRELSEARGYLTLATDEAGKKAGVALDAQLLLGKLNYACGSYDEAL 118
           ++E   I+E  + A+R    A G +  A +E   +  V  +  L++ K+  A  + +   
Sbjct: 64  IEEQKRIREEEKLARR----ASGQVDAAMEE---EDAVDENGSLMISKIAEAAQASNPDD 116

Query: 119 KHYKLAELNTLTEKELPVRS 138
           +   + E + L E  L V S
Sbjct: 117 EEEFVMEEDNLGEAPLLVDS 136


>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1526

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 28/122 (22%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 54   KLEAYLDEWPPIKENIERAQRELSEARGYLTLATDEAGKKAGVALDAQLLLGKLNYACGS 113
            K+E  L E   +KE +   +++L + +G L    +   +     L  +    + N  C S
Sbjct: 930  KVETLLSEQNELKEKLSLEEKDLLDTKGEL----ESLRENNATVLSEK---AEFNEQCKS 982

Query: 114  YDEALKHYKLAELNTLT----EKELPVRSLRIVAESYAIKGFCLEQNAVPSSTSRYKQAE 169
              E +   K AEL+ LT    + +  ++ +R+  +    K    ++ ++  S  R K+ E
Sbjct: 983  LQETIV-TKDAELDKLTKYISDYKTEIQEMRLTNQKMNEKSI-QQEGSLSESLKRVKKLE 1040

Query: 170  RE 171
            RE
Sbjct: 1041 RE 1042


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)

Query: 116  EALKHYKLAELNTLTEKELPVRSLRIVAESYAIKGFCL 153
            E+L  Y LAE+  L  K++P++   +  E+     FC+
Sbjct: 1411 ESLSKYNLAEIPLLDSKKVPIQIFFLQGENKNYVLFCI 1448


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 13   ETEIDKSREEANWKKAVELAQQLKSRSPQHESLAHFLIGEGKLE-AYLDEWPPIKENIE 70
            E E+D+      +K  V + +  K    ++E+    L     L+ AYLDE PP +E  E
Sbjct: 1050 ERELDRMARR-KFKLVVSMQRYAKFTKEEYENAEFLLRAYPDLQIAYLDEDPPEEEGAE 1107


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 105 GKLNYACGSYDEALKHYKLAELNT 128
           G  N+  G Y+EAL H+   E +T
Sbjct: 194 GLANFCLGDYEEALAHFLKVETDT 217


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,096,546
Number of Sequences: 5004
Number of extensions: 37320
Number of successful extensions: 100
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 97
Number of HSP's gapped (non-prelim): 8
length of query: 338
length of database: 2,362,478
effective HSP length: 73
effective length of query: 265
effective length of database: 1,997,186
effective search space: 529254290
effective search space used: 529254290
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 54 (25.8 bits)