GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001312-TA|BGIBMGA001312-PA|undefined
         (338 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.6  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.6  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    22   8.7  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 63  PPIKENIERAQRELSEARGYLTLATDEAGK 92
           PP+K   ++  ++  + +   T+ T++AGK
Sbjct: 968 PPVKVQSQQQSQQSQQQQQQQTIVTNQAGK 997


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 116 EALKHYKLAELNTLTEKELPVRSLRIVAESYAI 148
           E LK+Y    L+ L++ E+ + ++  +  SYA+
Sbjct: 261 EGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYAL 293



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 144 ESYAIKGFCL 153
           +SYA+ GFCL
Sbjct: 446 DSYAVSGFCL 455


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 10/33 (30%), Positives = 20/33 (60%)

Query: 116 EALKHYKLAELNTLTEKELPVRSLRIVAESYAI 148
           E LK+Y    L+ L++ E+ + ++  +  SYA+
Sbjct: 314 EGLKYYVTPNLSKLSDPEVWIDAVTQIFFSYAL 346



 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 144 ESYAIKGFCL 153
           +SYA+ GFCL
Sbjct: 499 DSYAVSGFCL 508


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 166 KQAEREAEMVYKPPVAVAPAQGTLTRRREDHVSEG 200
           ++ EREAE  Y   + +     T+T+R +   S+G
Sbjct: 14  ERREREAEHGYASTMPMPDDMRTVTKRPKTKKSQG 48


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,278
Number of Sequences: 429
Number of extensions: 2604
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 338
length of database: 140,377
effective HSP length: 58
effective length of query: 280
effective length of database: 115,495
effective search space: 32338600
effective search space used: 32338600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 44 (21.8 bits)