GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001312-TA|BGIBMGA001312-PA|undefined
         (338 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09490.1 68416.m01128 chloroplast lumen common family protein...    34   0.16 
At1g27460.1 68414.m03348 calmodulin-binding protein similar to c...    31   1.1  
At1g78915.1 68414.m09200 expressed protein                             31   1.5  
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela...    30   2.5  
At4g07800.1 68417.m01233 hypothetical protein                          30   2.5  
At2g38650.1 68415.m04747 glycosyl transferase family 8 protein c...    29   3.4  
At5g38830.1 68418.m04697 tRNA synthetase class I (C) family prot...    28   7.8  
At5g33290.1 68418.m03948 exostosin family protein contains Pfam ...    28   7.8  
At5g16180.1 68418.m01891 hypothetical protein contains Pfam doma...    28   7.8  

>At3g09490.1 68416.m01128 chloroplast lumen common family protein 2
           TPR domains; similar to chloroplast lumen proteins
           [GI:4056493 (F3G5.19)(At2g37400)] and [GI:7413648
           (T22P11.180),(At5g02590)] [Arabidopsis thaliana]; +
          Length = 334

 Score = 33.9 bits (74), Expect = 0.16
 Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 1/58 (1%)

Query: 13  ETEIDKSRE-EANWKKAVELAQQLKSRSPQHESLAHFLIGEGKLEAYLDEWPPIKENI 69
           ET ++K  E ++N   A+ L  ++K +S +HE    FL    ++E Y  +WP +K  I
Sbjct: 99  ETTLEKHLETQSNDVNALSLLTEIKFKSDKHEQAIVFLDRLIEIEPYERKWPAMKARI 156


>At1g27460.1 68414.m03348 calmodulin-binding protein similar to
           calmodulin-binding protein MPCBP [Zea mays] GI:10086260;
           contains Pfam profile PF00515: TPR Domain
          Length = 694

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 99  DAQLLLGKLNYACGSYDEALKHYKLAELNTLTEK 132
           +A+ LLG+L Y  G++D AL+ +K  ++  LT +
Sbjct: 67  EARALLGRLEYQRGNFDAALQVFKGIDIKVLTPR 100


>At1g78915.1 68414.m09200 expressed protein
          Length = 385

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 54  KLEAYLDEWPPIKENIERAQRELSEARGYLTLAT--DEAGKKAGVALDAQLLLGKLNYAC 111
           + E  L+  P  +  +E A   L+E   Y   A   ++  K+     D   LLG++NY  
Sbjct: 176 EFETTLNGTPQDQAALEGAAVTLTELGDYSRAAAFLEKLAKERPTDPDVFRLLGEVNYEL 235

Query: 112 GSYDEALKHYKLAE 125
            +Y+ ++  YK++E
Sbjct: 236 NNYEGSIAAYKISE 249


>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
           low similarity to nuclear matrix constituent protein 1
           (NMCP1) [Daucus carota] GI:2190187
          Length = 1042

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/73 (24%), Positives = 39/73 (53%), Gaps = 2/73 (2%)

Query: 13  ETEIDKSREEANWKKAVELAQQLKSRSPQHESLAHFLIGE-GKLEAYLDEWPPIKENIER 71
           E ++D+ R E  W +  +  ++LK +  + E+  H L  E  ++   ++E   + EN++ 
Sbjct: 715 EIKLDRERREREWAELKDSVEELKVQREKLETQRHMLRAERDEIRHEIEELKKL-ENLKV 773

Query: 72  AQRELSEARGYLT 84
           A  ++S A+  L+
Sbjct: 774 ALDDMSMAKMQLS 786


>At4g07800.1 68417.m01233 hypothetical protein 
          Length = 448

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 29/105 (27%), Positives = 48/105 (45%), Gaps = 9/105 (8%)

Query: 2   TSKSKNAVRGFETEIDKSREEANWKKAVELAQQLKSRSPQHESLAHFLIGEGKLEAYLDE 61
           T K K+ ++ +   I  S  EA W+        ++ RS   + L+  +  EGK  AY D 
Sbjct: 301 TKKKKDGIKDWFDYIYVSASEAIWRI---FKFPIQHRSTPVQKLSFHV--EGKQPAYFDA 355

Query: 62  WPPIKENIERAQRELSEARGYLTL----ATDEAGKKAGVALDAQL 102
              + + +ER   E S+   +LTL       + GK+A   L A++
Sbjct: 356 KAKMVDVLERVSNEDSQFMVWLTLNKKNVVGKNGKRARNCLYAEI 400


>At2g38650.1 68415.m04747 glycosyl transferase family 8 protein
           contains Pfam profile: PF01501 glycosyl transferase
           family 8
          Length = 619

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 151 FCL--EQNAVPSSTSRYKQAERE--AEMVYKPPVAVAPAQGTLTRRREDHVSE 199
           +CL  E+N  P   ++ KQ + +      Y P +A  P+Q  LTR  + ++ E
Sbjct: 164 YCLWREENKEPMKDAKVKQMKDQLFVARAYYPSIAKMPSQSKLTRDMKQNIQE 216


>At5g38830.1 68418.m04697 tRNA synthetase class I (C) family protein
           similar to SP|Q06752 Cysteinyl-tRNA synthetase (EC
           6.1.1.16) (Cysteine--tRNA ligase) (CysRS) {Bacillus
           subtilis}; contains Pfam profile PF01406: tRNA
           synthetases class I (C)
          Length = 511

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 11/110 (10%)

Query: 18  KSREEANWKKAVE-LAQQLKSRSPQHESLAHFLIGEGKLEAYLDEWPPIKENIERAQREL 76
           KS + A  K  ++ L  + +S+     + AH L G     AY D    I  ++ + ++  
Sbjct: 348 KSEQTAEGKDIIKKLKTEFESKMLDDLNTAHILTG-----AYQDALKFINASLSKLKKMQ 402

Query: 77  SEARGYLTLATDEAGKKAGVALDAQLLLGKLNYACGSYDEALKHYKLAEL 126
            + R  + ++  E  K A   LD   LL  L+YA     E LK  KL  L
Sbjct: 403 KKQRMSMLVSLVEIEKAAREVLDVLGLLTTLSYA-----EILKEMKLKTL 447


>At5g33290.1 68418.m03948 exostosin family protein contains Pfam
           profile: PF03016 Exostosin family
          Length = 500

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 5/73 (6%)

Query: 113 SYDEALKHYKLAELNTLTEKELPVRSLRIVAESYAIKGFCLEQNAV--PSSTSRYKQAER 170
           S+ E +  +K+    T TE E+P+     V + Y I+G  +++  V  P S SR++    
Sbjct: 156 SHTEMMNRFKVW---TYTEGEVPLFHDGPVNDIYGIEGQFMDEMCVDGPKSRSRFRADRP 212

Query: 171 EAEMVYKPPVAVA 183
           E   V+  P +VA
Sbjct: 213 ENAHVFFIPFSVA 225


>At5g16180.1 68418.m01891 hypothetical protein contains Pfam domain,
           PF04581: Protein of unknown function (DUF578)
          Length = 718

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 30/115 (26%), Positives = 51/115 (44%), Gaps = 10/115 (8%)

Query: 83  LTLATDEAGKKAGVALDAQLLLGKLNYACGSYDEALKHYKLAEL-NTLTEKELPVRSLRI 141
           LT    E  ++ G+ +++ L+LG+     G  +   +H+K  E+   +T ++L     R+
Sbjct: 570 LTNEERECLRRIGLKMNSSLVLGRRGVFFGVMEGLHQHWKHREVAKVITMQKL---FSRV 626

Query: 142 VAESYAIKGFCLEQNAVPSSTSRYKQAER---EAEMVYKPPVAVAPAQGTLTRRR 193
           V   Y  K    E N V  S  + K+           YK P +   AQ  LT+R+
Sbjct: 627 V---YTAKALETESNGVLISIEKLKEGHAILIYRGKNYKRPSSKLMAQNLLTKRK 678


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.313    0.128    0.369 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,752,610
Number of Sequences: 28952
Number of extensions: 197326
Number of successful extensions: 502
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 499
Number of HSP's gapped (non-prelim): 10
length of query: 338
length of database: 12,070,560
effective HSP length: 81
effective length of query: 257
effective length of database: 9,725,448
effective search space: 2499440136
effective search space used: 2499440136
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
S2: 60 (28.3 bits)