Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001311-TA|BGIBMGA001311-PA|undefined
         (85 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    20   3.1  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   9.6  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 3.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 36  FVCCSWLHVDTTGVGKLAHGS 56
           F C SWL +    +G++  G+
Sbjct: 393 FKCLSWLDLSYNRLGQIDAGT 413


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 18.6 bits (36), Expect = 9.6
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 33  PQSFVCCSWLHVD 45
           P S V  +WL+VD
Sbjct: 542 PASAVGIAWLYVD 554


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,920
Number of Sequences: 317
Number of extensions: 691
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 85
length of database: 114,650
effective HSP length: 47
effective length of query: 38
effective length of database: 99,751
effective search space:  3790538
effective search space used:  3790538
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.9 bits)
S2: 36 (18.6 bits)