Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001311-TA|BGIBMGA001311-PA|undefined
         (85 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12950.1 68416.m01613 expressed protein                             26   3.6  
At4g10640.1 68417.m01738 calmodulin-binding family protein conta...    25   6.2  
At2g20900.3 68415.m02465 diacylglycerol kinase, putative contain...    25   6.2  
At2g20900.2 68415.m02464 diacylglycerol kinase, putative contain...    25   6.2  
At2g20900.1 68415.m02463 diacylglycerol kinase, putative contain...    25   6.2  
At2g17820.1 68415.m02064 histidine kinase 1 99% identical to GP:...    25   6.2  
At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein ...    25   8.2  

>At3g12950.1 68416.m01613 expressed protein 
          Length = 558

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 46  TTGVGKLAHGSAPPYLSARRMTGRPARTLVALL 78
           TTG+  +   S+PPY++ ++    P   L A L
Sbjct: 438 TTGMSSMVADSSPPYVNLKKEKRSPEEKLEASL 470


>At4g10640.1 68417.m01738 calmodulin-binding family protein contains
           IQ calmodulin-binding motif, Pfam:PF00612
          Length = 423

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 8   HARRRFPLTPPKVQHYSTTVLRRACPQ 34
           H +R +P TPP  +   + ++R A P+
Sbjct: 308 HHQRSYPATPPSCRASRSVMVRSASPR 334


>At2g20900.3 68415.m02465 diacylglycerol kinase, putative contains
           INTERPRO domain, IPR001206, DAG-kinase catalytic domain
          Length = 491

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 3   IKHEIHARRRFPLTPPKVQHY---STTVLRRACPQSFVCCSWLHVDTTGVGKLA 53
           I +  H+ R+  L P K ++     +T ++  C Q + C S  H  +  + +LA
Sbjct: 244 ISYAFHSERK--LHPEKFKNQLVNQSTYVKLGCTQGWFCASLFHPASRNIAQLA 295


>At2g20900.2 68415.m02464 diacylglycerol kinase, putative contains
           INTERPRO domain, IPR001206, DAG-kinase catalytic domain
          Length = 491

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 3   IKHEIHARRRFPLTPPKVQHY---STTVLRRACPQSFVCCSWLHVDTTGVGKLA 53
           I +  H+ R+  L P K ++     +T ++  C Q + C S  H  +  + +LA
Sbjct: 244 ISYAFHSERK--LHPEKFKNQLVNQSTYVKLGCTQGWFCASLFHPASRNIAQLA 295


>At2g20900.1 68415.m02463 diacylglycerol kinase, putative contains
           INTERPRO domain, IPR001206, DAG-kinase catalytic domain
          Length = 509

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 3   IKHEIHARRRFPLTPPKVQHY---STTVLRRACPQSFVCCSWLHVDTTGVGKLA 53
           I +  H+ R+  L P K ++     +T ++  C Q + C S  H  +  + +LA
Sbjct: 244 ISYAFHSERK--LHPEKFKNQLVNQSTYVKLGCTQGWFCASLFHPASRNIAQLA 295


>At2g17820.1 68415.m02064 histidine kinase 1 99% identical to
           GP:4586626
          Length = 1207

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 14  PLTPPKVQHYSTTVLRRACPQSFVCCSWLHVDTTGVG 50
           P+   +VQH +   L+++C  +     W  VD TG G
Sbjct: 664 PMKTKQVQHRNH--LQKSCKNANKMVLWFEVDDTGCG 698


>At3g50700.1 68416.m05547 zinc finger (C2H2 type) family protein
           contains Pfam domain, PF00096: Zinc finger, C2H2 type
          Length = 452

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 2/30 (6%)

Query: 53  AHGSAPPYLSARRMTGRPARTLVALLQRLA 82
           +HGS+  +L + R   +PA +  ALLQ+ A
Sbjct: 310 SHGSS--FLGSNRFHAQPAMSATALLQKAA 337


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,447
Number of Sequences: 28952
Number of extensions: 65209
Number of successful extensions: 151
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 149
Number of HSP's gapped (non-prelim): 7
length of query: 85
length of database: 12,070,560
effective HSP length: 64
effective length of query: 21
effective length of database: 10,217,632
effective search space: 214570272
effective search space used: 214570272
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)