GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001311-TA|BGIBMGA001311-PA|undefined
         (85 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma c...    25   1.5  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    23   8.0  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    23   8.0  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    23   8.0  

>SPCC24B10.22 ||SPCPB16A4.01|mitochondrial DNA polymerase gamma
          catalytic subunit|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 1018

 Score = 25.0 bits (52), Expect = 1.5
 Identities = 6/14 (42%), Positives = 9/14 (64%)

Query: 30 RACPQSFVCCSWLH 43
          +ACP +  C  W+H
Sbjct: 4  KACPSTLTCSKWIH 17


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 15  LTPPKVQHYSTTVLRRACPQSFVCCSWLHVDTTGVGKLAHGSAPPYLSARRMTGRPARTL 74
           L PP     S    RR CP+ FV    +   T+   ++  G   PYL  + +  +   TL
Sbjct: 413 LRPPPSIASSPESKRRKCPKKFVARPPVPHPTSLYSQIRIGC--PYLKPKLVISKSFGTL 470

Query: 75  V 75
           +
Sbjct: 471 I 471


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 1   MIIKHEIHARRRFPLTPPKVQHYSTT 26
           M ++HE      +P  P ++Q YS +
Sbjct: 332 MALEHEYFTTPPYPANPSELQSYSAS 357


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
          Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 22.6 bits (46), Expect = 8.0
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 8  HARRRFPLTPPKV 20
          H+R R+P TPP +
Sbjct: 56 HSRHRYPETPPSL 68


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 367,972
Number of Sequences: 5004
Number of extensions: 11841
Number of successful extensions: 26
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 5
length of query: 85
length of database: 2,362,478
effective HSP length: 60
effective length of query: 25
effective length of database: 2,062,238
effective search space: 51555950
effective search space used: 51555950
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 46 (22.6 bits)