GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001311-TA|BGIBMGA001311-PA|undefined
         (85 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0349 + 2529279-2530446,2532232-2533036,2533066-2533106,253...    26   3.3  
01_03_0002 - 11506135-11506783,11506815-11506912                       26   3.3  
04_04_0500 - 25677767-25680850                                         26   4.3  
02_01_0763 - 5665010-5665202,5665285-5665375,5665460-5666245,566...    25   5.7  
06_03_0290 - 19193707-19193752,19193822-19194090                       25   10.0 
05_01_0184 - 1298640-1298751,1298936-1299027,1299695-1299910,130...    25   10.0 
05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107           25   10.0 

>06_01_0349 +
           2529279-2530446,2532232-2533036,2533066-2533106,
           2533219-2533424
          Length = 739

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 12/48 (25%), Positives = 26/48 (54%), Gaps = 2/48 (4%)

Query: 6   EIHARR-RFPLTPPKVQHYSTTVLRRACPQSFVCCSWLHVDTTGVGKL 52
           E+H  + + P     V+ + T    + CP++ +C +W ++  +G G+L
Sbjct: 212 EVHIEKPKVPHVECIVEDFPTESHSQPCPENHICVTWPYLVASG-GRL 258


>01_03_0002 - 11506135-11506783,11506815-11506912
          Length = 248

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 46  TTGVGKLAHGSAPPYLSARRMTGRPARTLVALLQRLAAAP 85
           TTG  +L    A P+ SA    G+P     AL   LA AP
Sbjct: 155 TTGAVRLMRRGAAPWASASSSGGKPTAAAAAL--SLAEAP 192


>04_04_0500 - 25677767-25680850
          Length = 1027

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 3  IKHEIHARRRFPLTPPKVQHYST 25
          +  E HAR  F  +PP+ +H  T
Sbjct: 52 LSRECHARHPFDASPPRARHSQT 74


>02_01_0763 -
           5665010-5665202,5665285-5665375,5665460-5666245,
           5667745-5668225
          Length = 516

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)

Query: 54  HGSAPPYLSARRMTGRPARTLVALLQRL 81
           H SA  YL A  ++G  +RT  A L RL
Sbjct: 230 HASASKYLIAGGVSGATSRTATAPLDRL 257


>06_03_0290 - 19193707-19193752,19193822-19194090
          Length = 104

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 48 GVGKLAHGS-APPYLSARRMTGRPART 73
          G G  +  S APP + ARR  G  ART
Sbjct: 48 GCGSSSSSSFAPPRMQARRAAGSAART 74


>05_01_0184 -
          1298640-1298751,1298936-1299027,1299695-1299910,
          1300045-1300614
          Length = 329

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 46 TTGVGKLAHGSAPPYLSARRMTGRPARTL 74
          TT +G++A G  PP  +     G PA +L
Sbjct: 37 TTAIGRVAAGRRPPAPATGPPQGTPAMSL 65


>05_01_0182 + 1284900-1285469,1285604-1286612,1286698-1287107
          Length = 662

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 46 TTGVGKLAHGSAPPYLSARRMTGRPARTL 74
          TT +G++A G  PP  +     G PA +L
Sbjct: 37 TTAIGRVAAGRRPPAPATGPPQGTPAMSL 65


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,815
Number of Sequences: 37544
Number of extensions: 100630
Number of successful extensions: 274
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 7
length of query: 85
length of database: 14,793,348
effective HSP length: 64
effective length of query: 21
effective length of database: 12,390,532
effective search space: 260201172
effective search space used: 260201172
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)