GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001311-TA|BGIBMGA001311-PA|undefined
         (85 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)              31   0.18 
SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)                  27   2.2  
SB_19183| Best HMM Match : SOUL (HMM E-Value=2.1)                      25   6.6  
SB_10318| Best HMM Match : zf-CCHC (HMM E-Value=0.00061)               25   8.8  
SB_54| Best HMM Match : Actin (HMM E-Value=0)                          25   8.8  

>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
          Length = 1325

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 4   KHEIHARRRFPLTPPKVQHYSTTVLRRACPQSFVCCSWLHVDTTGVGKLAHGSAPPYLSA 63
           KH+ ++ R +  T  +V+H +TT + R      +  ++LH DT   GK    S   Y + 
Sbjct: 871 KHDSYSTRIY--TTKRVRHINTTAIPRVSTPRHLFHAYLHHDTRTTGKYDSYSTRIYTTT 928

Query: 64  R 64
           R
Sbjct: 929 R 929


>SB_8572| Best HMM Match : RVT_1 (HMM E-Value=5.6e-17)
          Length = 1432

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 4    KHEIHARRRFPLTPPKVQHYSTTVLRRACPQSFVCCSWLHVDTTGVGKLAHGSA-PPYLS 62
            + + H RR FP +PP     S    RR    S +C +W  +      ++   SA   YL 
Sbjct: 1278 RQDAHFRRLFPPSPPP----SWNRDRRDLTVSVLCNTWRQIGLAQARRIIFVSACQGYLQ 1333

Query: 63   ARRMTGRPARTLVALLQR 80
            A  M       + A+ +R
Sbjct: 1334 AHGMGRHTEEEIYAIAER 1351


>SB_19183| Best HMM Match : SOUL (HMM E-Value=2.1)
          Length = 442

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)

Query: 53  AHGSAPP-YLSARRMTGRPARTLVALLQRLAA 83
           A+GSA P   +A +    PARTL AL +R+ +
Sbjct: 102 ANGSAEPDKQAAEQAAHEPARTLSALAERITS 133


>SB_10318| Best HMM Match : zf-CCHC (HMM E-Value=0.00061)
          Length = 602

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 43  HVDTTGVGKLAHGSAPPYLSARRMTGRPARTLVALLQRLAAA 84
           + D   + K   GSAP Y    +  G+   T V+L ++   A
Sbjct: 395 YTDNDALNKPQTGSAPVYAVENKCQGQKCETKVSLYEKFPQA 436


>SB_54| Best HMM Match : Actin (HMM E-Value=0)
          Length = 2486

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 4    KHEIHARRRFPLTPPKVQHYSTTVLRRACPQSFVCCSWLHVDTTGVGKL 52
            + E   R RF     K +HY+ TV  +   +S    S   V+T G G L
Sbjct: 1458 QQEAGERGRFDRVDGKREHYAFTVREQENMRSITSDSSEEVETFGQGNL 1506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,962,341
Number of Sequences: 59808
Number of extensions: 98902
Number of successful extensions: 262
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 258
Number of HSP's gapped (non-prelim): 6
length of query: 85
length of database: 16,821,457
effective HSP length: 62
effective length of query: 23
effective length of database: 13,113,361
effective search space: 301607303
effective search space used: 301607303
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 52 (25.0 bits)