GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001311-TA|BGIBMGA001311-PA|undefined
         (85 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse defecti...    29   0.40 
U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.       27   1.2  
L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine t...    27   1.2  
AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated...    27   1.2  
Z69787-9|CAA93634.1|  226|Caenorhabditis elegans Hypothetical pr...    25   6.6  
AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical...    25   6.6  

>U28741-5|AAO38644.1|  987|Caenorhabditis elegans Synapse
          defective protein 1, isoforma protein.
          Length = 987

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 8/71 (11%)

Query: 17 PPKVQHYSTTVLRRACPQSFVCCSWL--------HVDTTGVGKLAHGSAPPYLSARRMTG 68
          PPK   Y  T L    PQ+  CC WL         VD T      + S PP     R+  
Sbjct: 23 PPKGMPYPPTYLYTEEPQNECCCCWLCRLLCCCSPVDQTASRSRMNASQPPPGGGGRLPD 82

Query: 69 RPARTLVALLQ 79
             R + A+ Q
Sbjct: 83 EVFRKITAVDQ 93


>U09277-1|AAC13764.1|  532|Caenorhabditis elegans UNC-17 protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 23  YSTTVLRRACPQSFVCCSWLHVDTTGVGKLAH 54
           Y+T+V++   P SFVC     +DT+ +  L H
Sbjct: 355 YTTSVMQLVIPLSFVCFGIALIDTSLLPMLGH 386


>L19621-1|AAC14456.1|  532|Caenorhabditis elegans acetylcholine
           transporter protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 23  YSTTVLRRACPQSFVCCSWLHVDTTGVGKLAH 54
           Y+T+V++   P SFVC     +DT+ +  L H
Sbjct: 355 YTTSVMQLVIPLSFVCFGIALIDTSLLPMLGH 386


>AF036701-4|AAB88371.1|  532|Caenorhabditis elegans Uncoordinated
           protein 17, isoform a protein.
          Length = 532

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/32 (37%), Positives = 19/32 (59%)

Query: 23  YSTTVLRRACPQSFVCCSWLHVDTTGVGKLAH 54
           Y+T+V++   P SFVC     +DT+ +  L H
Sbjct: 355 YTTSVMQLVIPLSFVCFGIALIDTSLLPMLGH 386


>Z69787-9|CAA93634.1|  226|Caenorhabditis elegans Hypothetical
           protein C44C10.8 protein.
          Length = 226

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)

Query: 10  RRRFPLTPPKVQHYSTTVLRRACPQSFVCCSWLHVD 45
           RRR    P  +Q Y+    R+  P S   C++ HVD
Sbjct: 140 RRRCSSVPEGIQRYTPYQSRQFGPISNNVCNFRHVD 175


>AC006674-13|AAF39942.1|  281|Caenorhabditis elegans Hypothetical
           protein K12H6.7 protein.
          Length = 281

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 2   IIKHEIHARRRFPLTPPKVQHYSTTVLRRACPQSFVCCSWLHVDTTGVGKLA 53
           I+  +I      P   PK  ++ +T       + + C +W+ +  +G GK+A
Sbjct: 215 IVYEDIDVSDWDPAERPKEFNFVSTFFPENFNKVYDCSTWMDIKRSGDGKIA 266


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.136    0.439 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,099,519
Number of Sequences: 27539
Number of extensions: 71130
Number of successful extensions: 121
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 115
Number of HSP's gapped (non-prelim): 6
length of query: 85
length of database: 12,573,161
effective HSP length: 64
effective length of query: 21
effective length of database: 10,810,665
effective search space: 227023965
effective search space used: 227023965
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.8 bits)
S2: 51 (24.6 bits)