Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001310-TA|BGIBMGA001310-PA|IPR001478|PDZ/DHR/GLGF,
IPR008283|Peptidase M17, leucyl aminopeptidase, N-terminal,
IPR000819|Peptidase M17, leucyl aminopeptidase, C-terminal
         (812 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    24   3.6  
DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory pro...    24   4.8  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    23   6.3  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    23   8.3  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    23   8.3  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 24.2 bits (50), Expect = 3.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)

Query: 236  ELSERMKLGQAFVLTDVVP 254
            ++S  +KLGQ FVL D+ P
Sbjct: 1538 QVSNNVKLGQNFVLLDLDP 1556


>DQ855491-1|ABH88178.1|  144|Tribolium castaneum chemosensory
           protein 5 protein.
          Length = 144

 Score = 23.8 bits (49), Expect = 4.8
 Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 4/92 (4%)

Query: 167 DVIDDSIVNLNMCSDKYV-REASGEINQKLDSSKKGLVLGVYQCG-KKLELTPVGQELDQ 224
           D ++   ++ +   DKY  R  + ++++ L S  K L+L    C  +K   +P G+EL +
Sbjct: 18  DFVNGKTLHRSTRDDKYTTRYDNVDVDRILHS--KRLLLNYINCLLEKGPCSPEGRELKK 75

Query: 225 KSGGKILQHLNELSERMKLGQAFVLTDVVPEY 256
                ++ + ++ SE  K     +LT V+  Y
Sbjct: 76  ILPDALVTNCSKCSEVQKKQAGKILTFVLLNY 107


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 23.4 bits (48), Expect = 6.3
 Identities = 14/48 (29%), Positives = 18/48 (37%)

Query: 526 FPPSCKIGRLTNHSYSIKKRYCRYGCSIEDTDMEGRLMLADALVYGQA 573
           F   CK        Y  K  + +     E TD+E  L     L+YG A
Sbjct: 16  FAAYCKAESKVVCYYDSKSHFRQGQAKFEITDLEPALQYCTHLIYGYA 63


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 652 TSVDGVPVTGATHQRAVALVCRAAHRGHVTLGVRHNRADIQAM 694
           T+ D VP+ G      + +V  +     V L   H  ADI  M
Sbjct: 266 TTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNYHHRTADIHEM 308


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 652 TSVDGVPVTGATHQRAVALVCRAAHRGHVTLGVRHNRADIQAM 694
           T+ D VP+ G      + +V  +     V L   H  ADI  M
Sbjct: 266 TTSDAVPLIGTYFNCIMFMVASSVVLTVVVLNYHHRTADIHEM 308


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,334
Number of Sequences: 317
Number of extensions: 7506
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 5
length of query: 812
length of database: 114,650
effective HSP length: 62
effective length of query: 750
effective length of database: 94,996
effective search space: 71247000
effective search space used: 71247000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)