Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001310-TA|BGIBMGA001310-PA|IPR001478|PDZ/DHR/GLGF,
IPR008283|Peptidase M17, leucyl aminopeptidase, N-terminal,
IPR000819|Peptidase M17, leucyl aminopeptidase, C-terminal
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|c...   109   1e-24
SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual        35   0.039
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    32   0.28 
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    29   2.6  
SPBC1539.05 |cog3||Golgi transport complex subunit Cog3 |Schizos...    28   4.5  

>SPAC13A11.05 |||peptidase family M17|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 513

 Score =  109 bits (263), Expect = 1e-24
 Identities = 75/232 (32%), Positives = 111/232 (47%), Gaps = 7/232 (3%)

Query: 354 AWHAGSVLGRAQNWARFLSDMPANKMTPIDLGQAALDTLCPLG-VTVEAREREWIEAQNM 412
           A+  G +   AQN AR L + PAN MT +     A +       V V   + +WI+ Q M
Sbjct: 183 AFKVGLIEAAAQNLARSLMECPANYMTSLQFCHFAQELFQNSSKVKVFVHDEKWIDEQKM 242

Query: 413 QAFLTVARGSCEEPIFLECNYRGDKESRPP--VVIAAKGVTFDSGGLCLKKRESMVENRG 470
              LTV  GS   P FLE  Y G ++S+    + +  KGVTFDSGG+ +K  ++M E R 
Sbjct: 243 NGLLTVNAGSDIPPRFLEVQYIGKEKSKDDGWLGLVGKGVTFDSGGISIKPSQNMKEMRA 302

Query: 471 SMXXXXXXXXXXXXXXXXQVPINVCAVIPICENMVSGQCMKVGDVVRALNGLSIQFPPSC 530
            M                 +P+N   V P+ EN+ SG   K GDV+   NGLS++   + 
Sbjct: 303 DMGGAAVMLSSIYALEQLSIPVNAVFVTPLTENLPSGSAAKPGDVIFMRNGLSVEIDNTD 362

Query: 531 KIGR--LTNHSYSIKKRYCRYGCSIEDTDMEGRLMLADALVY-GQAVHKPEL 579
             GR  L +  + +  +Y +    IE + + G +++A   V+ G  V   EL
Sbjct: 363 AEGRLILADAVHYVSSQY-KTKAVIEASTLTGAMLVALGNVFTGAFVQGEEL 413



 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 2/94 (2%)

Query: 546 YCRYGCSIE--DTDMEGRLMLADALVYGQAVHKPELVIDVATFTRGVLQALGGAACGCYT 603
           + R G S+E  +TD EGRL+LADA+ Y  + +K + VI+ +T T  +L ALG    G + 
Sbjct: 349 FMRNGLSVEIDNTDAEGRLILADAVHYVSSQYKTKAVIEASTLTGAMLVALGNVFTGAFV 408

Query: 604 ESEALWRDVTAAGARSGDRAWRLPLWDYYRRQIT 637
           + E LW+++  A   +GD  WR+P  + Y +Q+T
Sbjct: 409 QGEELWKNLETASHDAGDLFWRMPFHEAYLKQLT 442


>SPAP8A3.02c |||2 OG-Fe|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 225

 Score = 35.1 bits (77), Expect = 0.039
 Identities = 25/99 (25%), Positives = 42/99 (42%), Gaps = 7/99 (7%)

Query: 63  LDLYLERIHKLNVMCGRRPNHVLVNEYTPGQGIMPHLDGNLFYPTITTISVGSHIVLKFL 122
           L+ Y+    K  +  G+    +++  Y PG GI+PH D  +F   +   S  S+  + F 
Sbjct: 97  LNDYIPSDFKQRLWKGQDAEAIIMQVYNPGDGIIPHKDLEMFGDGVAIFSFLSNTTMIFT 156

Query: 123 KPTTDNEKVEMQPMFSFLLEPRSLLILQDKLFSHYLHSI 161
            P       E++      LE  SLL++       + H I
Sbjct: 157 HP-------ELKLKSKIRLEKGSLLLMSGTARYDWFHEI 188


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 32.3 bits (70), Expect = 0.28
 Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 1/48 (2%)

Query: 743  SSTNKATSTIGQLIPNSPAERCGLLH-VGDTIVAINHAPVRNLSHPEV 789
            S+++ +T  I   IP +P E  G+L+  G T V+I+ + + NL + EV
Sbjct: 1450 STSSSSTQPINSTIPINPLENHGMLNSFGSTTVSISFSVLTNLDNKEV 1497


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/67 (26%), Positives = 30/67 (44%)

Query: 190 EINQKLDSSKKGLVLGVYQCGKKLELTPVGQELDQKSGGKILQHLNELSERMKLGQAFVL 249
           E N   + SK  +++G     K   L P   E    +  K LQH  ++S +  L  A + 
Sbjct: 367 EQNNPENGSKVTVMMGGSAYTKNTSLIPTNPEEAVNNALKALQHTLKISSKPTLTNATLQ 426

Query: 250 TDVVPEY 256
            + +P+Y
Sbjct: 427 QNCIPQY 433


>SPBC1539.05 |cog3||Golgi transport complex subunit Cog3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/82 (23%), Positives = 37/82 (45%)

Query: 121 FLKPTTDNEKVEMQPMFSFLLEPRSLLILQDKLFSHYLHSIEELNEDVIDDSIVNLNMCS 180
           F  P  +N  VE Q +F F  +   + I+    FS    + +++NE     +I++  +  
Sbjct: 62  FSLPNPNNSTVEKQSLFPFEEKMNPIWIISRPTFSIEQDAEKKINELQTFTNIIDQILGQ 121

Query: 181 DKYVREASGEINQKLDSSKKGL 202
              +      + +K +SS+K L
Sbjct: 122 TNNIESTLLSMKEKFESSEKKL 143


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,437,247
Number of Sequences: 5004
Number of extensions: 140089
Number of successful extensions: 308
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 301
Number of HSP's gapped (non-prelim): 6
length of query: 812
length of database: 2,362,478
effective HSP length: 79
effective length of query: 733
effective length of database: 1,967,162
effective search space: 1441929746
effective search space used: 1441929746
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)