Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001310-TA|BGIBMGA001310-PA|IPR001478|PDZ/DHR/GLGF,
IPR008283|Peptidase M17, leucyl aminopeptidase, N-terminal,
IPR000819|Peptidase M17, leucyl aminopeptidase, C-terminal
         (812 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           25   1.9  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    24   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   5.7  
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   5.7  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    24   5.7  

>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 5/56 (8%)

Query: 15 AKAEEQLILSNIYAAPKPKWTQLSNRRLQNWGGVPHNKGMIAETIPTWLDLYLERI 70
          AK   +++  NI    KP     + RRL   GGV    G+I E     L ++LE +
Sbjct: 16 AKRHRKVLGDNIQGITKP-----AIRRLARRGGVKRISGLIYEETRGVLKVFLENV 66


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 24.2 bits (50), Expect = 4.3
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 611 DVTAAGARSGDRAWRLPLWDYYRRQITGGPAEGLVRAGDL 650
           D     +R  D+A RLPL D Y+    G    G V  G L
Sbjct: 233 DAILPPSRPTDKALRLPLQDVYKIGGIGTVPVGRVETGIL 272


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 232  QHLNELSERMKLGQAFVLTDVVP 254
            Q  N++S  +K G  FV+ D+VP
Sbjct: 1504 QEWNQVSNNVKPGGNFVVLDLVP 1526


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 15/40 (37%), Positives = 17/40 (42%)

Query: 611 DVTAAGARSGDRAWRLPLWDYYRRQITGGPAEGLVRAGDL 650
           D      R  D+A RLPL D Y+    G    G V  G L
Sbjct: 176 DAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVL 215


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 23.8 bits (49), Expect = 5.7
 Identities = 15/40 (37%), Positives = 17/40 (42%)

Query: 611 DVTAAGARSGDRAWRLPLWDYYRRQITGGPAEGLVRAGDL 650
           D      R  D+A RLPL D Y+    G    G V  G L
Sbjct: 233 DAILPPTRPTDKALRLPLQDVYKIGGIGTVPVGRVETGVL 272


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.413 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,359
Number of Sequences: 429
Number of extensions: 8975
Number of successful extensions: 31
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 26
Number of HSP's gapped (non-prelim): 5
length of query: 812
length of database: 140,377
effective HSP length: 63
effective length of query: 749
effective length of database: 113,350
effective search space: 84899150
effective search space used: 84899150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 47 (23.0 bits)