Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001309-TA|BGIBMGA001309-PA|IPR003780|Cytochrome oxidase
assembly
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...   157   2e-39
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch...    27   2.7  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   3.5  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score =  157 bits (381), Expect = 2e-39
 Identities = 102/334 (30%), Positives = 151/334 (45%), Gaps = 27/334 (8%)

Query: 4   WR-LLGEKMPTNEEEWQKEFEKYQQYPEFKYKNQNITFSDFKWIWYMEFAHRTWGRAIGA 62
           W+ + G   P  +E+W +EFE Y++ PEF+  N ++T  +FK I++ E+ HR  GR IG 
Sbjct: 131 WKPITGVIPPLTDEQWNQEFELYKKSPEFEKLNSHMTVDEFKNIFFWEWFHRVLGRGIGL 190

Query: 63  AMFLPAAYFWYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGPSDVPRVSQ 122
            + LP+ Y        P +  R+    GLV  QG++GW+MVKSGL +        PRVS 
Sbjct: 191 TILLPSIYMIVTKRASPWLSKRLIGLTGLVGLQGVIGWWMVKSGLSEELFSDGSHPRVSH 250

Query: 123 YRLAAHLSXXXXX------XXXXXXXXXXXXRPFPAAATLQ------KIKELKSITGLAH 170
           YRLA HL+                       +   + +T Q       ++++K      +
Sbjct: 251 YRLATHLAAAVALYIGLVWTGHGILQRHAFLKSMKSGSTSQLTSMVSSVQKMKGFRTSVN 310

Query: 171 AVKAMTFITAVSGAFVAGLDAGLVYNSFPKMGDNWL-PDDILAFSPTI-----------K 218
           +   +  IT +SGAFVAGLDAG++Y +FP+MG+  L P     F               +
Sbjct: 311 SFVGLVLITLLSGAFVAGLDAGMIYCTFPEMGEGRLAPSKSELFDQRFCRKDDKSDLIWR 370

Query: 219 NFTENPTTVQFDHRVLGXXXXXXX--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG 276
           N  +NP+ VQ +HR+L                                           G
Sbjct: 371 NMIDNPSLVQLEHRILAITTFVAACGLFIFSRAKRNILPKKIKTSINVVTGVVTAQATLG 430

Query: 277 VATLLCYVPTALAASHQAGSLVLLSLAVWLTHEV 310
           + TL+  VP  LAA HQAGSLV L+ A+ L   +
Sbjct: 431 IMTLIYVVPVPLAALHQAGSLVTLTAALSLAQRL 464


>SPAC1952.17c ||SPAC890.01c|GTPase activating
          protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 619

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 4  WRLLGEKMPTNEEEWQKEFEKYQQ-YPEF 31
          W L+ E +PT+   WQ   EK+++ Y  F
Sbjct: 44 WMLMLEFLPTDRSNWQSVLEKHRKTYTSF 72


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 177 FITAVSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFT--ENPTT 226
           FI+ ++  F+        + SFP + DNW     L F+ T + F   ++P+T
Sbjct: 263 FISRLASQFLVSFQTLPSFFSFPLVTDNWQHLAALPFNSTYETFRAFDHPST 314


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.324    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,674
Number of Sequences: 5004
Number of extensions: 42629
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 121
Number of HSP's gapped (non-prelim): 7
length of query: 318
length of database: 2,362,478
effective HSP length: 73
effective length of query: 245
effective length of database: 1,997,186
effective search space: 489310570
effective search space used: 489310570
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 54 (25.8 bits)