Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001309-TA|BGIBMGA001309-PA|IPR003780|Cytochrome oxidase
assembly
         (318 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)                 64   1e-10
SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  
SB_15380| Best HMM Match : RA (HMM E-Value=0.11)                       28   8.8  

>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1246

 Score = 64.5 bits (150), Expect = 1e-10
 Identities = 35/92 (38%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 95   QGLMGWYMVKSGLEDRFHGPSDVPRVSQYRLAAHLSXXXXXXXXXXXXXXXXXRPFPAAA 154
            +GL+GWYMVKSGL++   G +++PRVSQYRLA+HL                   P     
Sbjct: 1155 EGLLGWYMVKSGLDEELIG-NNIPRVSQYRLASHLGSAIVFYMGLLWCSLGQLLP---RN 1210

Query: 155  TLQKIKELKSITGLAHAVKAMTFITAVSGAFV 186
              +  KEL+      H+ K + F+TA+SG  V
Sbjct: 1211 QYELTKELRRFRMYTHSCKGLVFLTAISGVAV 1242


>SB_29734| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 304

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)

Query: 4   WRLLGE--KMPTNEEEWQKEFEKYQQYPEFKYK 34
           W+LL E  K P  EE  +      Q YP++KY+
Sbjct: 83  WKLLSESEKRPFVEESERLRIRHMQAYPDYKYR 115


>SB_15380| Best HMM Match : RA (HMM E-Value=0.11)
          Length = 2124

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 4    WRLLGEKMPTNEEEWQKEFEKYQQYPEFKYKNQNITFSDFKW 45
            W+  GE   T EEEW+KE E  ++  E    + +  F    W
Sbjct: 1188 WKTEGEGEKT-EEEWKKEVEGQREEKEDDKSDSHTKFKSLFW 1228


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.324    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,529,639
Number of Sequences: 59808
Number of extensions: 279259
Number of successful extensions: 718
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 714
Number of HSP's gapped (non-prelim): 4
length of query: 318
length of database: 16,821,457
effective HSP length: 82
effective length of query: 236
effective length of database: 11,917,201
effective search space: 2812459436
effective search space used: 2812459436
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)