Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001309-TA|BGIBMGA001309-PA|IPR003780|Cytochrome oxidase
assembly
(318 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY071468-1|AAL49090.1| 393|Drosophila melanogaster RE54691p pro... 343 2e-94
AE013599-3747|AAF47112.1| 393|Drosophila melanogaster CG3803-PA... 343 2e-94
AY071659-1|AAL49281.1| 436|Drosophila melanogaster RE74364p pro... 29 8.5
AY069772-1|AAL39917.1| 582|Drosophila melanogaster SD01508p pro... 29 8.5
AL121806-10|CAB58085.1| 692|Drosophila melanogaster EG:BACR42I1... 29 8.5
AE014298-2832|AAF48947.1| 582|Drosophila melanogaster CG8034-PA... 29 8.5
AE014298-161|AAF45593.2| 436|Drosophila melanogaster CG11381-PA... 29 8.5
>AY071468-1|AAL49090.1| 393|Drosophila melanogaster RE54691p
protein.
Length = 393
Score = 343 bits (843), Expect = 2e-94
Identities = 163/318 (51%), Positives = 197/318 (61%), Gaps = 2/318 (0%)
Query: 1 MVTWRLLGEKMPTNEEEWQKEFEKYQQYPEFKYKNQNITFSDFKWIWYMEFAHRTWGRAI 60
MVTW+L GE+MP +EEW +EF YQQYPE+K KN N+T +FK+I+ ME+ HR WGRAI
Sbjct: 78 MVTWKLTGERMPRTQEEWVQEFNLYQQYPEYKLKNVNMTVEEFKFIFMMEYMHRMWGRAI 137
Query: 61 GAAMFLPAAYFWYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGPSDVPRV 120
G LPA YFW +G K V + L+ QGLMGWYMVKSGLEDRF P+DVPRV
Sbjct: 138 GGFFLLPAVYFWRKGYFCAKTKKSVLLLGTLIGLQGLMGWYMVKSGLEDRFQDPNDVPRV 197
Query: 121 SQYRLAAHLSXXXXXXXXXXXXXXXXXRPFPAAATLQKIKELKSITGLAHAVKAMTFITA 180
SQYRLA+HL+ P + + K+ +I GL H KAM +TA
Sbjct: 198 SQYRLASHLAAAFVLYSLSLSKAMSLL--IPTNTFVIQAKKAFNIKGLTHLTKAMVLLTA 255
Query: 181 VSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFTENPTTVQFDHRVLGXXXXX 240
+SGAFVAGLDAGLVYNSFPKMGD W+PDD+ F+P KN TENPTTVQF+HR+LG
Sbjct: 256 ISGAFVAGLDAGLVYNSFPKMGDKWIPDDMWTFAPIQKNITENPTTVQFNHRILGISTVT 315
Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVATLLCYVPTALAASHQAGSLVLL 300
GV TLL YVP LA +HQ+GSL+LL
Sbjct: 316 LTTALWLVTRRMQLPKRANWAINAVVAMAWTQATLGVTTLLNYVPVPLATAHQSGSLILL 375
Query: 301 SLAVWLTHEVKLLKYIPK 318
S A+WL+HEV+LLKY+PK
Sbjct: 376 SFALWLSHEVRLLKYLPK 393
>AE013599-3747|AAF47112.1| 393|Drosophila melanogaster CG3803-PA
protein.
Length = 393
Score = 343 bits (843), Expect = 2e-94
Identities = 163/318 (51%), Positives = 197/318 (61%), Gaps = 2/318 (0%)
Query: 1 MVTWRLLGEKMPTNEEEWQKEFEKYQQYPEFKYKNQNITFSDFKWIWYMEFAHRTWGRAI 60
MVTW+L GE+MP +EEW +EF YQQYPE+K KN N+T +FK+I+ ME+ HR WGRAI
Sbjct: 78 MVTWKLTGERMPRTQEEWVQEFNLYQQYPEYKLKNVNMTVEEFKFIFMMEYMHRMWGRAI 137
Query: 61 GAAMFLPAAYFWYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGPSDVPRV 120
G LPA YFW +G K V + L+ QGLMGWYMVKSGLEDRF P+DVPRV
Sbjct: 138 GGFFLLPAVYFWRKGYFCAKTKKSVLLLGTLIGLQGLMGWYMVKSGLEDRFQDPNDVPRV 197
Query: 121 SQYRLAAHLSXXXXXXXXXXXXXXXXXRPFPAAATLQKIKELKSITGLAHAVKAMTFITA 180
SQYRLA+HL+ P + + K+ +I GL H KAM +TA
Sbjct: 198 SQYRLASHLAAAFVLYSLSLSKAMSLL--IPTNTFVIQAKKAFNIKGLTHLTKAMVLLTA 255
Query: 181 VSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFTENPTTVQFDHRVLGXXXXX 240
+SGAFVAGLDAGLVYNSFPKMGD W+PDD+ F+P KN TENPTTVQF+HR+LG
Sbjct: 256 ISGAFVAGLDAGLVYNSFPKMGDKWIPDDMWTFAPIQKNITENPTTVQFNHRILGISTVT 315
Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVATLLCYVPTALAASHQAGSLVLL 300
GV TLL YVP LA +HQ+GSL+LL
Sbjct: 316 LTTALWLVTRRMQLPKRANWAINAVVAMAWTQATLGVTTLLNYVPVPLATAHQSGSLILL 375
Query: 301 SLAVWLTHEVKLLKYIPK 318
S A+WL+HEV+LLKY+PK
Sbjct: 376 SFALWLSHEVRLLKYLPK 393
>AY071659-1|AAL49281.1| 436|Drosophila melanogaster RE74364p
protein.
Length = 436
Score = 29.1 bits (62), Expect = 8.5
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 4 WRLLGEKMPTNEEEWQKE--FEKYQQYPEFKYKNQ 36
W + E+ P N E WQ F+++QQ ++++Q
Sbjct: 205 WNFVQEQQPQNHEPWQSSHGFQQHQQQHSNRFESQ 239
>AY069772-1|AAL39917.1| 582|Drosophila melanogaster SD01508p
protein.
Length = 582
Score = 29.1 bits (62), Expect = 8.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 72 WYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGP 114
++RG L + + V+ YC L GW++V L GP
Sbjct: 469 FFRGSALSNFTLTVSEYCSLEKLPSAFGWHLVGKALFVITFGP 511
>AL121806-10|CAB58085.1| 692|Drosophila melanogaster EG:BACR42I17.9
protein.
Length = 692
Score = 29.1 bits (62), Expect = 8.5
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 4 WRLLGEKMPTNEEEWQKE--FEKYQQYPEFKYKNQ 36
W + E+ P N E WQ F+++QQ ++++Q
Sbjct: 205 WNFVQEQQPQNHEPWQSSHGFQQHQQQHSNRFESQ 239
>AE014298-2832|AAF48947.1| 582|Drosophila melanogaster CG8034-PA
protein.
Length = 582
Score = 29.1 bits (62), Expect = 8.5
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 72 WYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGP 114
++RG L + + V+ YC L GW++V L GP
Sbjct: 469 FFRGSALSNFTLTVSEYCSLEKLPSAFGWHLVGKALFVITFGP 511
>AE014298-161|AAF45593.2| 436|Drosophila melanogaster CG11381-PA
protein.
Length = 436
Score = 29.1 bits (62), Expect = 8.5
Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 4 WRLLGEKMPTNEEEWQKE--FEKYQQYPEFKYKNQ 36
W + E+ P N E WQ F+++QQ ++++Q
Sbjct: 205 WNFVQEQQPQNHEPWQSSHGFQQHQQQHSNRFESQ 239
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.324 0.136 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,462,202
Number of Sequences: 52641
Number of extensions: 415550
Number of successful extensions: 1252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 7
length of query: 318
length of database: 24,830,863
effective HSP length: 85
effective length of query: 233
effective length of database: 20,356,378
effective search space: 4743036074
effective search space used: 4743036074
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 62 (29.1 bits)
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