Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001309-TA|BGIBMGA001309-PA|IPR003780|Cytochrome oxidase
assembly
         (318 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g56090.1 68418.m06998 cytochrome oxidase assembly family prot...   246   2e-65
At2g20410.1 68415.m02382 activating signal cointegrator-related ...    32   0.58 
At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical...    29   5.4  
At2g36070.1 68415.m04429 mitochondrial import inner membrane tra...    29   5.4  

>At5g56090.1 68418.m06998 cytochrome oxidase assembly family protein
           contains PF02628: Cytochrome oxidase assembly protein
          Length = 457

 Score =  246 bits (601), Expect = 2e-65
 Identities = 128/325 (39%), Positives = 177/325 (54%), Gaps = 10/325 (3%)

Query: 1   MVTWRLLGEKMPTNEEEWQKEFEKYQQYPEFKYKNQNITFSDFKWIWYMEFAHRTWGRAI 60
           M  W+  GE  P ++E W KEFEKY+Q PE+K  N+ +   DFK+I++ME+AHR WGR +
Sbjct: 129 MTDWKFTGEFPPLSDEAWAKEFEKYKQSPEYKRVNKGMNLEDFKFIYWMEYAHRMWGRGL 188

Query: 61  GAAMFLPAAYFWYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGPSDV--P 118
           G    LP +YF  +G +   + ++++    L A QG +GW+MVKSGLE+    PS+   P
Sbjct: 189 GIMFALPFSYFLRKGYITLRLGVQLSGLFALGAGQGFIGWWMVKSGLEE---PPSEYSQP 245

Query: 119 RVSQYRLAAHLSXXXXXXXXXXXXXXXXXRPFPAAATLQKIKELKSITGLAHAVKAMTFI 178
           RVS YRLAAHL+                  P P A +L  ++    +  LA  V  +  I
Sbjct: 246 RVSPYRLAAHLTSAFAIYCGLFWTALSVVMPEPPAESLAWVRGAAKVKKLALPVSLIVGI 305

Query: 179 TAVSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFTENPTTVQFDHRVLGXXX 238
           TA+SGAFVAG DAG  +N+FPKMGD W+PD+I    P ++NF EN  TVQ DHR+L    
Sbjct: 306 TAISGAFVAGNDAGRAFNTFPKMGDTWIPDNIFEMKPLLRNFFENTATVQLDHRLLATTT 365

Query: 239 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVATLLCYVPTALAASHQAGSLV 298
                                                GV+TLL YVP +L ++HQAG+L 
Sbjct: 366 LIAIGTMWWFTRKLDIHPAVKALIGSTVGMTAVQVTLGVSTLLSYVPVSLGSAHQAGALT 425

Query: 299 LLSLAVWLTHEVK-----LLKYIPK 318
           LL+L + L H ++     LLK +P+
Sbjct: 426 LLTLMLLLNHTLRRPSPSLLKSLPQ 450


>At2g20410.1 68415.m02382 activating signal cointegrator-related
           similar to ASC-1 (GI:6581062) [Mus musculus]; similar to
           Activating signal cointegrator 1 (ASC-1) (Thyroid
           receptor interacting protein 4) (TRIP-4)
           (Swiss-Prot:Q15650) [Homo sapiens]
          Length = 339

 Score = 31.9 bits (69), Expect = 0.58
 Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 9/91 (9%)

Query: 148 RPFPAAATLQKIKEL--KSITGLAHAVKAMTFITAVSGAFVAGLDAGLVYNSFPKMGDNW 205
           +P     T+Q+ KEL  K +T L  A+K +T +TA     +AG  A      F K G + 
Sbjct: 178 KPGSIPCTMQEKKELDSKQVTSLTAAIKQVTSLTAA----IAGAKAAA--TQFSKKGQSL 231

Query: 206 LPDDILAFSPTIKN-FTENPTTVQFDHRVLG 235
             ++I  ++   K+   E+      D+ VLG
Sbjct: 232 QTNNIFDYTTRSKSKVIEDEAAESLDNPVLG 262


>At5g03280.1 68418.m00277 ethylene-insensitive 2 (EIN2) identical to
           EIN2 [Arabidopsis thaliana] gi|5231113|gb|AAD41076;
           member of the natural resistance-associated macrophage
           protein (NRAMP) metal transporter family, PMID:11500563;
           metal transport capacity has not been shown,
           PMID:11500563, PMID:1038174
          Length = 1294

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)

Query: 161 ELKSITGLAHAVKAMTFITAVSGAFVAGLDAGL--VYNSFPKMG 202
           +L  + G+AHA+  +  +   +G F+A +DA L  V+ SF + G
Sbjct: 109 DLTMVVGVAHALNLLFGVELSTGVFLAAMDAFLFPVFASFLENG 152


>At2g36070.1 68415.m04429 mitochondrial import inner membrane
           translocase subunit TIM44, putative contains similarity
           to Swiss-Prot:O35857 import inner membrane translocase
           subunit TIM44, mitochondrial precursor [Mus musculus];
           contains Pfam domian PF04280: Mitochondrial import inner
           membrane, translocase subunit TIM44
          Length = 469

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 4/26 (15%)

Query: 11  MPTNEEEWQKEF----EKYQQYPEFK 32
           MPT + +WQK++    EK Q YP FK
Sbjct: 237 MPTKQSKWQKKWESLREKMQGYPVFK 262


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.324    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,248,210
Number of Sequences: 28952
Number of extensions: 217627
Number of successful extensions: 649
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 645
Number of HSP's gapped (non-prelim): 4
length of query: 318
length of database: 12,070,560
effective HSP length: 81
effective length of query: 237
effective length of database: 9,725,448
effective search space: 2304931176
effective search space used: 2304931176
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 59 (27.9 bits)