GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001309-TA|BGIBMGA001309-PA|IPR003780|Cytochrome oxidase
assembly
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1123 + 24474434-24474538,24474800-24474860,24475050-244754...   215   3e-56

>08_02_1123 +
           24474434-24474538,24474800-24474860,24475050-24475477,
           24475915-24476231,24476991-24477216,24477302-24477547,
           24477635-24477745,24478051-24478182,24478297-24478325,
           24478352-24478502
          Length = 601

 Score =  215 bits (526), Expect = 3e-56
 Identities = 104/234 (44%), Positives = 141/234 (60%), Gaps = 1/234 (0%)

Query: 1   MVTWRLLGEKMPTNEEEWQKEFEKYQQYPEFKYKNQNITFSDFKWIWYMEFAHRTWGRAI 60
           M  W+  G   P ++EEW  EFEKY+  PE+K  N+ ++  DFK+I++ME+ HR WGRA+
Sbjct: 272 MTDWKFTGSLPPMSDEEWLLEFEKYKLSPEYKRVNKGMSLGDFKFIYWMEYGHRMWGRAL 331

Query: 61  GAAMFLPAAYFWYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGPSDVPRV 120
           G    +P AYF  +G +   + +R++    L A QGL+GW+MVKSGLE+        PRV
Sbjct: 332 GFLFSVPFAYFIAKGYVTRQLGLRLSGLFALGAGQGLIGWWMVKSGLEEP-ASEYVQPRV 390

Query: 121 SQYRLAAHLSXXXXXXXXXXXXXXXXXRPFPAAATLQKIKELKSITGLAHAVKAMTFITA 180
           S YRLA HL+                  P P A ++  +     I  LA  V A+  ITA
Sbjct: 391 SPYRLATHLTSAFVIYCGILWTALSVVMPEPPAGSMNWVNSAAKIKKLAIPVSAVVGITA 450

Query: 181 VSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFTENPTTVQFDHRVL 234
           +SGAFVAG DAG  YN+FPKMGD W+P+D+ A  P I+NF EN +TVQ +HR+L
Sbjct: 451 ISGAFVAGNDAGHAYNTFPKMGDTWIPEDVFAMEPFIRNFFENTSTVQLNHRIL 504


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.324    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,826,458
Number of Sequences: 37544
Number of extensions: 274968
Number of successful extensions: 785
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 782
Number of HSP's gapped (non-prelim): 1
length of query: 318
length of database: 14,793,348
effective HSP length: 82
effective length of query: 236
effective length of database: 11,714,740
effective search space: 2764678640
effective search space used: 2764678640
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)