GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001309-TA|BGIBMGA001309-PA|IPR003780|Cytochrome oxidase
assembly
         (318 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY071468-1|AAL49090.1|  393|Drosophila melanogaster RE54691p pro...   343   2e-94
AE013599-3747|AAF47112.1|  393|Drosophila melanogaster CG3803-PA...   343   2e-94
AY071659-1|AAL49281.1|  436|Drosophila melanogaster RE74364p pro...    29   8.5  
AY069772-1|AAL39917.1|  582|Drosophila melanogaster SD01508p pro...    29   8.5  
AL121806-10|CAB58085.1|  692|Drosophila melanogaster EG:BACR42I1...    29   8.5  
AE014298-2832|AAF48947.1|  582|Drosophila melanogaster CG8034-PA...    29   8.5  
AE014298-161|AAF45593.2|  436|Drosophila melanogaster CG11381-PA...    29   8.5  

>AY071468-1|AAL49090.1|  393|Drosophila melanogaster RE54691p
           protein.
          Length = 393

 Score =  343 bits (843), Expect = 2e-94
 Identities = 163/318 (51%), Positives = 197/318 (61%), Gaps = 2/318 (0%)

Query: 1   MVTWRLLGEKMPTNEEEWQKEFEKYQQYPEFKYKNQNITFSDFKWIWYMEFAHRTWGRAI 60
           MVTW+L GE+MP  +EEW +EF  YQQYPE+K KN N+T  +FK+I+ ME+ HR WGRAI
Sbjct: 78  MVTWKLTGERMPRTQEEWVQEFNLYQQYPEYKLKNVNMTVEEFKFIFMMEYMHRMWGRAI 137

Query: 61  GAAMFLPAAYFWYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGPSDVPRV 120
           G    LPA YFW +G      K  V +   L+  QGLMGWYMVKSGLEDRF  P+DVPRV
Sbjct: 138 GGFFLLPAVYFWRKGYFCAKTKKSVLLLGTLIGLQGLMGWYMVKSGLEDRFQDPNDVPRV 197

Query: 121 SQYRLAAHLSXXXXXXXXXXXXXXXXXRPFPAAATLQKIKELKSITGLAHAVKAMTFITA 180
           SQYRLA+HL+                    P    + + K+  +I GL H  KAM  +TA
Sbjct: 198 SQYRLASHLAAAFVLYSLSLSKAMSLL--IPTNTFVIQAKKAFNIKGLTHLTKAMVLLTA 255

Query: 181 VSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFTENPTTVQFDHRVLGXXXXX 240
           +SGAFVAGLDAGLVYNSFPKMGD W+PDD+  F+P  KN TENPTTVQF+HR+LG     
Sbjct: 256 ISGAFVAGLDAGLVYNSFPKMGDKWIPDDMWTFAPIQKNITENPTTVQFNHRILGISTVT 315

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVATLLCYVPTALAASHQAGSLVLL 300
                                              GV TLL YVP  LA +HQ+GSL+LL
Sbjct: 316 LTTALWLVTRRMQLPKRANWAINAVVAMAWTQATLGVTTLLNYVPVPLATAHQSGSLILL 375

Query: 301 SLAVWLTHEVKLLKYIPK 318
           S A+WL+HEV+LLKY+PK
Sbjct: 376 SFALWLSHEVRLLKYLPK 393


>AE013599-3747|AAF47112.1|  393|Drosophila melanogaster CG3803-PA
           protein.
          Length = 393

 Score =  343 bits (843), Expect = 2e-94
 Identities = 163/318 (51%), Positives = 197/318 (61%), Gaps = 2/318 (0%)

Query: 1   MVTWRLLGEKMPTNEEEWQKEFEKYQQYPEFKYKNQNITFSDFKWIWYMEFAHRTWGRAI 60
           MVTW+L GE+MP  +EEW +EF  YQQYPE+K KN N+T  +FK+I+ ME+ HR WGRAI
Sbjct: 78  MVTWKLTGERMPRTQEEWVQEFNLYQQYPEYKLKNVNMTVEEFKFIFMMEYMHRMWGRAI 137

Query: 61  GAAMFLPAAYFWYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGPSDVPRV 120
           G    LPA YFW +G      K  V +   L+  QGLMGWYMVKSGLEDRF  P+DVPRV
Sbjct: 138 GGFFLLPAVYFWRKGYFCAKTKKSVLLLGTLIGLQGLMGWYMVKSGLEDRFQDPNDVPRV 197

Query: 121 SQYRLAAHLSXXXXXXXXXXXXXXXXXRPFPAAATLQKIKELKSITGLAHAVKAMTFITA 180
           SQYRLA+HL+                    P    + + K+  +I GL H  KAM  +TA
Sbjct: 198 SQYRLASHLAAAFVLYSLSLSKAMSLL--IPTNTFVIQAKKAFNIKGLTHLTKAMVLLTA 255

Query: 181 VSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFTENPTTVQFDHRVLGXXXXX 240
           +SGAFVAGLDAGLVYNSFPKMGD W+PDD+  F+P  KN TENPTTVQF+HR+LG     
Sbjct: 256 ISGAFVAGLDAGLVYNSFPKMGDKWIPDDMWTFAPIQKNITENPTTVQFNHRILGISTVT 315

Query: 241 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVATLLCYVPTALAASHQAGSLVLL 300
                                              GV TLL YVP  LA +HQ+GSL+LL
Sbjct: 316 LTTALWLVTRRMQLPKRANWAINAVVAMAWTQATLGVTTLLNYVPVPLATAHQSGSLILL 375

Query: 301 SLAVWLTHEVKLLKYIPK 318
           S A+WL+HEV+LLKY+PK
Sbjct: 376 SFALWLSHEVRLLKYLPK 393


>AY071659-1|AAL49281.1|  436|Drosophila melanogaster RE74364p
           protein.
          Length = 436

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 4   WRLLGEKMPTNEEEWQKE--FEKYQQYPEFKYKNQ 36
           W  + E+ P N E WQ    F+++QQ    ++++Q
Sbjct: 205 WNFVQEQQPQNHEPWQSSHGFQQHQQQHSNRFESQ 239


>AY069772-1|AAL39917.1|  582|Drosophila melanogaster SD01508p
           protein.
          Length = 582

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 72  WYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGP 114
           ++RG  L +  + V+ YC L       GW++V   L     GP
Sbjct: 469 FFRGSALSNFTLTVSEYCSLEKLPSAFGWHLVGKALFVITFGP 511


>AL121806-10|CAB58085.1|  692|Drosophila melanogaster EG:BACR42I17.9
           protein.
          Length = 692

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 4   WRLLGEKMPTNEEEWQKE--FEKYQQYPEFKYKNQ 36
           W  + E+ P N E WQ    F+++QQ    ++++Q
Sbjct: 205 WNFVQEQQPQNHEPWQSSHGFQQHQQQHSNRFESQ 239


>AE014298-2832|AAF48947.1|  582|Drosophila melanogaster CG8034-PA
           protein.
          Length = 582

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 13/43 (30%), Positives = 20/43 (46%)

Query: 72  WYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGP 114
           ++RG  L +  + V+ YC L       GW++V   L     GP
Sbjct: 469 FFRGSALSNFTLTVSEYCSLEKLPSAFGWHLVGKALFVITFGP 511


>AE014298-161|AAF45593.2|  436|Drosophila melanogaster CG11381-PA
           protein.
          Length = 436

 Score = 29.1 bits (62), Expect = 8.5
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)

Query: 4   WRLLGEKMPTNEEEWQKE--FEKYQQYPEFKYKNQ 36
           W  + E+ P N E WQ    F+++QQ    ++++Q
Sbjct: 205 WNFVQEQQPQNHEPWQSSHGFQQHQQQHSNRFESQ 239


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.324    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,462,202
Number of Sequences: 52641
Number of extensions: 415550
Number of successful extensions: 1252
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1244
Number of HSP's gapped (non-prelim): 7
length of query: 318
length of database: 24,830,863
effective HSP length: 85
effective length of query: 233
effective length of database: 20,356,378
effective search space: 4743036074
effective search space used: 4743036074
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 62 (29.1 bits)