Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001309-TA|BGIBMGA001309-PA|IPR003780|Cytochrome oxidase
assembly
(318 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49130-5|CAA88968.1| 395|Caenorhabditis elegans Hypothetical pr... 272 3e-73
Z99710-6|CAB16868.1| 383|Caenorhabditis elegans Hypothetical pr... 31 1.1
EF015633-1|ABK20307.1| 383|Caenorhabditis elegans alpha 1,2-fuc... 31 1.1
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF043699-7|AAK84627.1| 927|Caenorhabditis elegans Dipeptidyl pe... 29 4.4
AF043699-6|AAB97564.1| 931|Caenorhabditis elegans Dipeptidyl pe... 29 4.4
AC084197-40|AAV34779.1| 377|Caenorhabditis elegans Hypothetical... 28 7.6
AC084197-39|AAL00874.3| 392|Caenorhabditis elegans Hypothetical... 28 7.6
>Z49130-5|CAA88968.1| 395|Caenorhabditis elegans Hypothetical
protein T06D8.5 protein.
Length = 395
Score = 272 bits (666), Expect = 3e-73
Identities = 141/317 (44%), Positives = 182/317 (57%), Gaps = 8/317 (2%)
Query: 1 MVTWRLLGE-KMPTNEEEWQKEFEKYQQYPEFKYKN--QNITFSDFKWIWYMEFAHRTWG 57
MV W L K P +++W++EFEKY+ YPE+KYK+ + +T ++FK+IW ME+ HR WG
Sbjct: 81 MVNWDLFRTMKPPFGQKQWEEEFEKYKAYPEYKYKSSSEEMTLNEFKFIWSMEYGHRMWG 140
Query: 58 RAIGAAMFLPAAYFWYRGMLLPDMKIRVAVYCGLVAAQGLMGWYMVKSGLEDRFHGPSDV 117
RAIG +P AYFW RG PDMK R+A+ L+ AQG +GW+MVKSGL D SDV
Sbjct: 141 RAIGIVFLIPCAYFWARGRFAPDMKRRMALATTLLLAQGGIGWWMVKSGL-DPSKNSSDV 199
Query: 118 PRVSQYRLAAHLSXXXXXXXXXX-XXXXXXXRPFPAAATLQKIKELKSITGLAHAVKAMT 176
PRVSQYRLA HL+ +P + K+ L+ G+ H K M
Sbjct: 200 PRVSQYRLATHLTMAFVLYSIFFWNGLSHLVKPHDLSKVRSKLGALR---GMTHGSKLMV 256
Query: 177 FITAVSGAFVAGLDAGLVYNSFPKMGDNWLPDDILAFSPTIKNFTENPTTVQFDHRVLGX 236
F TA+ GAFVAGLDAGLVYNS+PK +NW+P+++L+ SPT KNF EN TVQF HR L
Sbjct: 257 FSTAIMGAFVAGLDAGLVYNSWPKFAENWIPENMLSRSPTWKNFFENDVTVQFVHRNLAY 316
Query: 237 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVATLLCYVPTALAASHQAGS 296
GV TL+ YVP LAA HQ+GS
Sbjct: 317 LTVISVLSTFLIGRRAPIPKRTRMALNLTVAAVFGQAALGVFTLINYVPVWLAACHQSGS 376
Query: 297 LVLLSLAVWLTHEVKLL 313
+ LLS +WL+HE++ L
Sbjct: 377 MALLSSVLWLSHELRRL 393
>Z99710-6|CAB16868.1| 383|Caenorhabditis elegans Hypothetical
protein F08A8.5 protein.
Length = 383
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 150 FPAAATLQKIKELKSITGLAHAVKAMTFITAVSGAFVAGLDAGLVYNSFPKMGDNW---- 205
FP+ K+ E+ S+ G+A +++ I A + +F+ L+ + FPK+ D +
Sbjct: 71 FPSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETLNRN-IQPLFPKLADQFTLRI 129
Query: 206 LPDDILAFSPT 216
+PD ++ T
Sbjct: 130 IPDSLVTHQQT 140
>EF015633-1|ABK20307.1| 383|Caenorhabditis elegans alpha
1,2-fucosyltransferase protein.
Length = 383
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/71 (25%), Positives = 36/71 (50%), Gaps = 5/71 (7%)
Query: 150 FPAAATLQKIKELKSITGLAHAVKAMTFITAVSGAFVAGLDAGLVYNSFPKMGDNW---- 205
FP+ K+ E+ S+ G+A +++ I A + +F+ L+ + FPK+ D +
Sbjct: 71 FPSGGLGNKLFEIISLHGIATSLQRKAVINATNPSFIETLNRN-IQPLFPKLADQFTLRI 129
Query: 206 LPDDILAFSPT 216
+PD ++ T
Sbjct: 130 IPDSLVTHQQT 140
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 10 KMPTNEEEWQKEFEKYQQYPEFKYKNQNIT 39
K PT E+ QKEFE ++ E+ K +N T
Sbjct: 1527 KRPTEEQNLQKEFELTKKEEEYSVKMENRT 1556
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 10 KMPTNEEEWQKEFEKYQQYPEFKYKNQNIT 39
K PT E+ QKEFE ++ E+ K +N T
Sbjct: 1527 KRPTEEQNLQKEFELTKKEEEYSVKMENRT 1556
>AF043699-7|AAK84627.1| 927|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 3, isoform b protein.
Length = 927
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 22 FEKYQQYPEFKY----KNQNITFSDFKWIWYMEF 51
F+ Y++YP F Y I +DF WI Y+ F
Sbjct: 683 FDPYKKYPVFHYVYGGPGIQIVHNDFSWIQYIRF 716
>AF043699-6|AAB97564.1| 931|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 3, isoform a protein.
Length = 931
Score = 29.1 bits (62), Expect = 4.4
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 22 FEKYQQYPEFKY----KNQNITFSDFKWIWYMEF 51
F+ Y++YP F Y I +DF WI Y+ F
Sbjct: 687 FDPYKKYPVFHYVYGGPGIQIVHNDFSWIQYIRF 720
>AC084197-40|AAV34779.1| 377|Caenorhabditis elegans Hypothetical
protein Y73B6BL.31b protein.
Length = 377
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 49 MEFAHRTWGRAIGAAMFLPAAYFWYR-GM-LLPDMKIRVAVYCGL 91
++FA+ WG +GAA+ A F G+ LL + I V + CG+
Sbjct: 284 LQFAYAPWGPMVGAALLSMAFNFTINFGIALLNPLVISVGMLCGI 328
>AC084197-39|AAL00874.3| 392|Caenorhabditis elegans Hypothetical
protein Y73B6BL.31a protein.
Length = 392
Score = 28.3 bits (60), Expect = 7.6
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 49 MEFAHRTWGRAIGAAMFLPAAYFWYR-GM-LLPDMKIRVAVYCGL 91
++FA+ WG +GAA+ A F G+ LL + I V + CG+
Sbjct: 299 LQFAYAPWGPMVGAALLSMAFNFTINFGIALLNPLVISVGMLCGI 343
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.324 0.136 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,425,878
Number of Sequences: 27539
Number of extensions: 221011
Number of successful extensions: 704
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 693
Number of HSP's gapped (non-prelim): 11
length of query: 318
length of database: 12,573,161
effective HSP length: 81
effective length of query: 237
effective length of database: 10,342,502
effective search space: 2451172974
effective search space used: 2451172974
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 60 (28.3 bits)
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