GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001309-TA|BGIBMGA001309-PA|IPR003780|Cytochrome oxidase
assembly
         (318 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    23   4.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   6.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   8.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   8.1  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 8/17 (47%), Positives = 11/17 (64%)

Query: 98  MGWYMVKSGLEDRFHGP 114
           MG +++   LED F GP
Sbjct: 100 MGEFLIDPSLEDEFMGP 116


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 6.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 277 VATLLCYVPTALAASHQAGSLVLLSLAVWL 306
           VA L+ YVP+        G   LLS+ V+L
Sbjct: 230 VALLVFYVPSESGEKVTLGISALLSMTVFL 259


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 1/18 (5%)

Query: 10  KMPTNEEEWQKEFEK-YQ 26
           ++P  EEEW+ E E  YQ
Sbjct: 338 EIPLEEEEWENENESDYQ 355


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 12/37 (32%), Positives = 18/37 (48%)

Query: 277 VATLLCYVPTALAASHQAGSLVLLSLAVWLTHEVKLL 313
           +  L+ Y+P         G  +LLSL V+L    K+L
Sbjct: 250 LCVLVFYLPAEAGEKVTLGISILLSLVVFLLLVSKIL 286


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.324    0.136    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,017
Number of Sequences: 429
Number of extensions: 2624
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 4
length of query: 318
length of database: 140,377
effective HSP length: 58
effective length of query: 260
effective length of database: 115,495
effective search space: 30028700
effective search space used: 30028700
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.5 bits)
S2: 44 (21.8 bits)