Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001308-TA|BGIBMGA001308-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (219 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1...    29   0.53 
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    27   1.6  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    26   3.8  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    26   5.0  
SPBC4B4.04 |||translation initiation factor eIF2A |Schizosacchar...    26   5.0  

>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1004

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 65  DTVVTGLRGSKINSYKINLDKGKATIDFTANVTLKAHYVMDGQVLILPIRG 115
           DT+V  L G+    Y I+L +G+ T++  +N+        DG + I+ +RG
Sbjct: 573 DTLV--LEGTLHAQYYIDLKRGRVTLNQMSNIGFVCIGYQDGGITIIDMRG 621


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 26/100 (26%), Positives = 44/100 (44%), Gaps = 11/100 (11%)

Query: 103 VMDGQVLILPIRGNGPAKIKITNLRIVVTYDFTTVAGHWVLTGYKDHYKMDRAQFKFNNL 162
           ++DG V +     +G AK+   N+R   +       G W L G+     ++ A+++FN+ 
Sbjct: 157 IIDGLVFL-----HGSAKVIHYNIR--PSSVVVDAKGDWKLCGFSFSQSVESARYEFNDY 209

Query: 163 -FGGNKELAQTTEKFTNQNWEIIMQEIAPPALNQIISSCV 201
            FG    L Q+ +       E I  EIA P  +     C+
Sbjct: 210 DFGIPSSLQQSMDFLAP---EYITHEIAGPESDVFSFGCL 246


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 3/40 (7%)

Query: 8   SPCSASDPNLNECIQKVIEVVAPKFA-DGIAEL--GIAPL 44
           +PCS  + N N+C+   + ++A +   D I +L  G+A L
Sbjct: 136 NPCSPDEKNQNDCVDLKVHLIAKEDGRDAIIDLTRGLADL 175


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 31/116 (26%), Positives = 53/116 (45%), Gaps = 11/116 (9%)

Query: 17  LNECIQKVIEVVAPKFADGIAELGIAPLDPVQLGTVEVNN----PALKITFTDTVVTGLR 72
           L+  ++ + E   PK A+ IA     PL P+ L  ++ NN         TFT   +  +R
Sbjct: 83  LHYAVEYLKERNEPKTAEEIASYLSTPLTPMLLNLLKKNNRIYYDERNETFTFKPLHNIR 142

Query: 73  G-----SKINSYKINLDKG-KATIDFTANVTLKAHYV-MDGQVLILPIRGNGPAKI 121
                 + ++S K ++    K   D   NVT++   +   G+VL+L  R +G  K+
Sbjct: 143 SGAGLLAYLDSQKTHVGMSIKELRDGWPNVTVELEELEKQGEVLLLRTRKDGVPKM 198


>SPBC4B4.04 |||translation initiation factor eIF2A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 576

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 147 KDHYKMDRAQFKFNNLFGGNKELAQTTEKFTNQNW 181
           K  +K D+ QFK+N L      L QT    +N+N+
Sbjct: 210 KTFFKADKVQFKWNALGTSLLVLTQTEVDKSNKNY 244


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 958,061
Number of Sequences: 5004
Number of extensions: 37588
Number of successful extensions: 79
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 76
Number of HSP's gapped (non-prelim): 5
length of query: 219
length of database: 2,362,478
effective HSP length: 70
effective length of query: 149
effective length of database: 2,012,198
effective search space: 299817502
effective search space used: 299817502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)