Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001308-TA|BGIBMGA001308-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (219 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containi...    31   0.81 
At5g67400.1 68418.m08499 peroxidase 73 (PER73) (P73) (PRXR11) id...    29   3.3  
At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase fam...    29   3.3  
At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase fam...    27   7.5  
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p...    27   7.5  

>At3g52140.1 68416.m05723 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515: TPR Domain
          Length = 1403

 Score = 30.7 bits (66), Expect = 0.81
 Identities = 14/62 (22%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 11  SASDPNLNECIQKVIEVVAPKFADGIAELGIAPLDPVQLGTVEVNNPALKITFTDTVVTG 70
           +A + N+ +    +++VV PKF + +  L ++P+D   L T  ++   + + +   V  G
Sbjct: 784 AADEENVKKVSSYLVDVVLPKFIEDLCTLEVSPMDGQTL-TEALHAHGVNVRYIGRVANG 842

Query: 71  LR 72
           ++
Sbjct: 843 VK 844


>At5g67400.1 68418.m08499 peroxidase 73 (PER73) (P73) (PRXR11)
           identical to SP|Q43873 Peroxidase 73 precursor (EC
           1.11.1.7) (Atperox P73) (PRXR11) (ATP10a) {Arabidopsis
           thaliana}
          Length = 329

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/45 (28%), Positives = 20/45 (44%)

Query: 12  ASDPNLNECIQKVIEVVAPKFADGIAELGIAPLDPVQLGTVEVNN 56
           A DP LN+   K +++  PK  D    + + P  P Q   +   N
Sbjct: 219 AVDPTLNKAYAKELQLACPKTVDPRIAINMDPTTPRQFDNIYFKN 263


>At3g62830.1 68416.m07059 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains non-consensus CA
           donor splice site at exon 1 and TA acceptor splice site
           at exon 2
          Length = 445

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 26/84 (30%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 115 GNGPAKIKITNLRIVVTYDFTTVAGHWVLTGYKDHYKMDRAQ--FKFNNLFGGNKELAQT 172
           G  P  +K   LR+VVT     V  H V     D   M R       +N F G KE    
Sbjct: 108 GKIPLGLKRKGLRVVVTGGAGFVGSHLV-----DRL-MARGDTVIVVDNFFTGRKE--NV 159

Query: 173 TEKFTNQNWEIIMQEIAPPALNQI 196
              F+N N+E+I  ++  P L ++
Sbjct: 160 MHHFSNPNFEMIRHDVVEPILLEV 183


>At2g47650.1 68415.m05950 NAD-dependent epimerase/dehydratase family
           protein similar to UDP-glucuronic acid decarboxylase
           Uxs1p from Filobasidiella neoformans GI:14318327;
           contains Pfam profile PF01370 NAD dependent
           epimerase/dehydratase family; contains non-consensus AT
           donor splice site at exon 1 and  non-consensus AC
           acceptor splice site at exon 2
          Length = 443

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 10/84 (11%)

Query: 115 GNGPAKIKITNLRIVVTYDFTTVAGHWV--LTGYKDHYKMDRAQFKFNNLFGGNKELAQT 172
           G  P  +K   LR+VVT     V  H V  L    D+  +       +N F G KE    
Sbjct: 110 GKIPLGLKRKVLRVVVTGGAGFVGSHLVDRLMARGDNVIV------VDNFFTGRKE--NV 161

Query: 173 TEKFTNQNWEIIMQEIAPPALNQI 196
              F N N+E+I  ++  P L ++
Sbjct: 162 MHHFNNPNFEMIRHDVVEPILLEV 185


>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
           putative similar to ELONGATION FACTOR 2 GB:O14460 from
           [Schizosaccharomyces pombe]
          Length = 843

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 25/109 (22%), Positives = 47/109 (43%), Gaps = 4/109 (3%)

Query: 5   SFISPCSASDPNLNECIQKVIEVVAPKFADGIAELGIAPLDPVQLG-TVEVNNPALKITF 63
           S I+        L + +     ++A + A G   +     D  + G T++    +L    
Sbjct: 23  SVIAHVDHGKSTLTDSLVAAAGIIAQEVA-GDVRMTDTRADEAERGITIKSTGISLYYEM 81

Query: 64  TDTVVTGLRGSKI-NSYKINLDKGKATIDFTANVTLKAHYVMDGQVLIL 111
           TD  +    G++  N Y INL      +DF++ VT  A  + DG ++++
Sbjct: 82  TDESLKSFTGARDGNEYLINLIDSPGHVDFSSEVT-AALRITDGALVVV 129


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,943,339
Number of Sequences: 28952
Number of extensions: 191873
Number of successful extensions: 391
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 388
Number of HSP's gapped (non-prelim): 6
length of query: 219
length of database: 12,070,560
effective HSP length: 78
effective length of query: 141
effective length of database: 9,812,304
effective search space: 1383534864
effective search space used: 1383534864
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)