GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001308-TA|BGIBMGA001308-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (219 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0781 + 11141469-11141486,11141855-11141978,11142024-111423...    30   1.3  
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912     30   1.3  
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855...    30   1.7  
12_02_0858 + 23740589-23743233,23743362-23743503,23744778-237449...    28   5.2  
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410           28   6.8  

>03_02_0781 +
           11141469-11141486,11141855-11141978,11142024-11142340,
           11143219-11143509,11143751-11143956,11144048-11144327
          Length = 411

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 36  IAELGIAPLDPVQLGTVEVNNPALKITFTDTVVTGLRGSKINSYKINLDKGKATIDFTAN 95
           ++  GI       LG  +V     K TF   +V   + S +  Y +NLD    T+ F AN
Sbjct: 59  LSNFGIGSSGLKGLGLCDVGTG--KTTFMHRLVCHTQASNMRGYVLNLDPAVMTLPFGAN 116

Query: 96  VTLK 99
           + ++
Sbjct: 117 IDIR 120


>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
          Length = 853

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)

Query: 51  TVEVNNPALKITFTDTVVTGLRGSKI-NSYKINLDKGKATIDFTANVTLKAHYVMDGQVL 109
           T++    +L    TD  +    G +  NSY INL      IDF++ VT  A  + DG ++
Sbjct: 69  TIKSTGISLYYEMTDAALRSFEGKRDGNSYLINLIDSPGHIDFSSEVT-AALRITDGALV 127

Query: 110 IL 111
           ++
Sbjct: 128 VV 129


>03_02_0445 -
          8551912-8552047,8552729-8552896,8553785-8554068,
          8554143-8555386,8556901-8556967,8557059-8557150,
          8557269-8557480,8558541-8558623,8559092-8559122,
          8559770-8559951,8560557-8560616,8561092-8561289,
          8561485-8561539,8562740-8562855,8563012-8563176,
          8563310-8563483,8564134-8564333,8564778-8564882,
          8565063-8565126,8566452-8566718
          Length = 1300

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 16/43 (37%), Positives = 19/43 (44%)

Query: 8  SPCSASDPNLNECIQKVIEVVAPKFADGIAELGIAPLDPVQLG 50
          SP SA    L  C+Q  +    PK   G  E G A L P+  G
Sbjct: 26 SPASADGNRLRRCVQSKLSWGPPKAGGGGGEAGGAGLPPLAAG 68


>12_02_0858 +
           23740589-23743233,23743362-23743503,23744778-23744990,
           23745083-23745190,23745378-23745587,23745881-23746055,
           23746197-23746264
          Length = 1186

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 14  DPNLNECIQKVIEVVAPKFADGIAE 38
           DPN N  +QK IE V P+F     E
Sbjct: 956 DPNANHVVQKCIEHVPPRFIQFFVE 980


>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
          Length = 1044

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)

Query: 113 IRGNGPAKIKITNLRIVVTYDFTTVAGHWV-LTGYKDHYKMDRAQFKFNNLFG 164
           +RG  P+   +T+L++V+ Y     AG W  L+  K+   + +  F  NNL G
Sbjct: 370 LRGVIPSFSLMTDLQVVMLYSNQLEAGDWAFLSSLKNCSNLLKLHFGENNLRG 422


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,038,751
Number of Sequences: 37544
Number of extensions: 227376
Number of successful extensions: 485
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 5
length of query: 219
length of database: 14,793,348
effective HSP length: 79
effective length of query: 140
effective length of database: 11,827,372
effective search space: 1655832080
effective search space used: 1655832080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)