GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001308-TA|BGIBMGA001308-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (219 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52627| Best HMM Match : MSG (HMM E-Value=5.2)                       30   1.7  
SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   5.3  
SB_41085| Best HMM Match : Auxin_repressed (HMM E-Value=9)             27   9.2  

>SB_52627| Best HMM Match : MSG (HMM E-Value=5.2)
          Length = 210

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 141 WVLTGYKDHYKM---DRAQFKFNNLFGGNKELAQTTEKFTNQNWEIIMQEIAPPALNQII 197
           WVL    ++ K+   ++A    N LFG  K L  +T   ++ NW    +E+    ++Q+ 
Sbjct: 84  WVLEIKLENLKVGNKNKANVLTNILFGLKKRLTISTVLASSDNWHFAEEELTNLTMDQLY 143

Query: 198 SSC 200
             C
Sbjct: 144 QEC 146


>SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/75 (26%), Positives = 39/75 (52%), Gaps = 1/75 (1%)

Query: 59  LKITFTDTVVTGLRGSKINSYKINLDKGKATIDFTANVTLKAHYVMDGQVLILPIRGNGP 118
           +K + T  +    R S  +  KIN DK   +++ +     K + V+D   L+LP+ G   
Sbjct: 97  MKASSTSGLGKNRRSSLKSDEKINSDKRVKSLNPSRRHREKLNTVLDELSLLLPLDGTVK 156

Query: 119 AKI-KITNLRIVVTY 132
            K+ K++ L++ V++
Sbjct: 157 KKLDKLSVLKLTVSF 171


>SB_762| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 202

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 6/65 (9%)

Query: 45  DPVQLGTVEVNNPALKITFTDTVVTGLRGSKINSYKINLDKGKATIDFTANVTLKAHYVM 104
           DPV   TV  + P  KI     + TG    K+N   + L K ++++D     T+   Y  
Sbjct: 63  DPVDTWTVTFS-PDSKI-----LATGSHSGKVNLINLELGKKESSLDTRGKFTMSLAYSP 116

Query: 105 DGQVL 109
           DG  +
Sbjct: 117 DGHYI 121


>SB_41085| Best HMM Match : Auxin_repressed (HMM E-Value=9)
          Length = 206

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 39  LGIAPLDPVQLGTVEVNNPALKITFTDTVVTGLRGSKINSYKINLDKGKATI 90
           +G +P +P   GT+   NP  +IT+ DT        K  S +I+ D G  T+
Sbjct: 93  VGASPSNPANPGTIY--NPFDRITYQDTEARDTTTDKGLSAQIDHDFGNLTV 142


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,790,141
Number of Sequences: 59808
Number of extensions: 252673
Number of successful extensions: 473
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 472
Number of HSP's gapped (non-prelim): 4
length of query: 219
length of database: 16,821,457
effective HSP length: 79
effective length of query: 140
effective length of database: 12,096,625
effective search space: 1693527500
effective search space used: 1693527500
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)