GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001308-TA|BGIBMGA001308-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (219 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11505-1|CAA77582.1|  460|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical pr...    30   1.5  
Z68882-7|CAD89727.1|  292|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68882-6|CAA93107.3|  406|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68882-5|CAD89726.1|  407|Caenorhabditis elegans Hypothetical pr...    29   2.0  
Z68882-4|CAD89728.1|  338|Caenorhabditis elegans Hypothetical pr...    29   2.0  
U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical pr...    27   7.9  
U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical pr...    27   7.9  
AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF016446-9|AAC24169.2|  340|Caenorhabditis elegans Hypothetical ...    27   7.9  
AF003140-6|AAB54170.1|  349|Caenorhabditis elegans Hypothetical ...    27   7.9  

>Z11505-1|CAA77582.1|  460|Caenorhabditis elegans Hypothetical
           protein F59B2.2 protein.
          Length = 460

 Score = 31.5 bits (68), Expect = 0.49
 Identities = 21/73 (28%), Positives = 35/73 (47%), Gaps = 8/73 (10%)

Query: 84  DKGKATIDFTANVTL--KAHYVMDGQVLILPIRG--NGP----AKIKITNLRIVVTYDFT 135
           DK  A  +FT  +T+   + Y  +GQ +ILPI    + P    A   + +  +++   F 
Sbjct: 225 DKLPAATNFTGTITMIGMSMYAFEGQTMILPIENKLDNPAAFLAPFGVLSTTMIICTAFM 284

Query: 136 TVAGHWVLTGYKD 148
           T  G +  TG+ D
Sbjct: 285 TALGFFGYTGFGD 297


>Z92806-4|CAB07259.1|  727|Caenorhabditis elegans Hypothetical
           protein K10G4.4 protein.
          Length = 727

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 59  LKITFTDTVVTGLRGSKINSYKINLDKGKATIDFT 93
           LK + ++T+V  +  SK  S K+ +D+G+  I+FT
Sbjct: 566 LKYSISNTLVKKIEASKNWSLKVKIDEGQVQINFT 600


>Z68882-7|CAD89727.1|  292|Caenorhabditis elegans Hypothetical
           protein C47E12.4d protein.
          Length = 292

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 156 QFKFNNLFGGNKELAQTTEKFTNQNWEIIMQEIAPPALNQIISSCVEKVKQLFGAVPATE 215
           +F FN  F  N+E A+     TN+ W+ +++E A P+LN  +S   E V Q      AT 
Sbjct: 211 EFAFNGEFK-NREYAEKVIDETNEYWKTLIKE-ANPSLN-TVSRVPEAVHQGTDEAAATA 267

Query: 216 L 216
           +
Sbjct: 268 I 268


>Z68882-6|CAA93107.3|  406|Caenorhabditis elegans Hypothetical
           protein C47E12.4c protein.
          Length = 406

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 156 QFKFNNLFGGNKELAQTTEKFTNQNWEIIMQEIAPPALNQIISSCVEKVKQLFGAVPATE 215
           +F FN  F  N+E A+     TN+ W+ +++E A P+LN  +S   E V Q      AT 
Sbjct: 325 EFAFNGEFK-NREYAEKVIDETNEYWKTLIKE-ANPSLN-TVSRVPEAVHQGTDEAAATA 381

Query: 216 L 216
           +
Sbjct: 382 I 382


>Z68882-5|CAD89726.1|  407|Caenorhabditis elegans Hypothetical
           protein C47E12.4b protein.
          Length = 407

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 156 QFKFNNLFGGNKELAQTTEKFTNQNWEIIMQEIAPPALNQIISSCVEKVKQLFGAVPATE 215
           +F FN  F  N+E A+     TN+ W+ +++E A P+LN  +S   E V Q      AT 
Sbjct: 326 EFAFNGEFK-NREYAEKVIDETNEYWKTLIKE-ANPSLN-TVSRVPEAVHQGTDEAAATA 382

Query: 216 L 216
           +
Sbjct: 383 I 383


>Z68882-4|CAD89728.1|  338|Caenorhabditis elegans Hypothetical
           protein C47E12.4a protein.
          Length = 338

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 156 QFKFNNLFGGNKELAQTTEKFTNQNWEIIMQEIAPPALNQIISSCVEKVKQLFGAVPATE 215
           +F FN  F  N+E A+     TN+ W+ +++E A P+LN  +S   E V Q      AT 
Sbjct: 257 EFAFNGEFK-NREYAEKVIDETNEYWKTLIKE-ANPSLN-TVSRVPEAVHQGTDEAAATA 313

Query: 216 L 216
           +
Sbjct: 314 I 314


>U58761-4|AAB00715.1|  631|Caenorhabditis elegans Hypothetical
           protein C01F1.3a protein.
          Length = 631

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 14/61 (22%), Positives = 27/61 (44%)

Query: 116 NGPAKIKITNLRIVVTYDFTTVAGHWVLTGYKDHYKMDRAQFKFNNLFGGNKELAQTTEK 175
           N   K++ + L     Y  T +AG   +  Y+  Y +     + NN++G N+   +   +
Sbjct: 144 NEQGKVEFSRLVPGNPYAATKIAGEAYVRAYQTQYNLPIVTARMNNIYGPNQWDVKVVPR 203

Query: 176 F 176
           F
Sbjct: 204 F 204


>Z75545-6|CAA99888.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 176 FTNQNWEIIMQEIAPPALNQIISSCVEKVKQLFGAVPATELL 217
           F  QN  I +  +AP A+N  + +C E ++ +    P  E+L
Sbjct: 186 FIQQNGLIKIGCVAPDAINHHVKTCRENMRYMHYIAPEYEIL 227


>U29097-4|AAM98031.1|  308|Caenorhabditis elegans Hypothetical
           protein F18C5.4 protein.
          Length = 308

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 55  NNPALKITFTDTVVTGLRGSKINSYKINLDKGKATIDFTANVTLKAHYVMDGQVLI 110
           N   +++TFT     G   + I  +++ +D    TI    + +   HYV DG +L+
Sbjct: 103 NTQMVELTFT---YRGGAATGIIIHRMAVDPKTVTISMVQSASNACHYVKDGDILV 155


>AL008986-2|CAA15621.3|  649|Caenorhabditis elegans Hypothetical
           protein H37N21.1 protein.
          Length = 649

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 176 FTNQNWEIIMQEIAPPALNQIISSCVEKVKQLFGAVPATELL 217
           F  QN  I +  +AP A+N  + +C E ++ +    P  E+L
Sbjct: 186 FIQQNGLIKIGCVAPDAINHHVKTCRENMRYMHYIAPEYEIL 227


>AF016446-9|AAC24169.2|  340|Caenorhabditis elegans Hypothetical
           protein C02E7.10 protein.
          Length = 340

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 2   LQASFISPCSASDPNLNECIQKVIEVVAP 30
           LQA+F   C  S PNL+  ++K+I  + P
Sbjct: 250 LQATFRLRCKGSQPNLDLILEKLIPYLFP 278


>AF003140-6|AAB54170.1|  349|Caenorhabditis elegans Hypothetical
           protein C44E4.2 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/43 (25%), Positives = 20/43 (46%)

Query: 166 NKELAQTTEKFTNQNWEIIMQEIAPPALNQIISSCVEKVKQLF 208
           N +L +T  K  NQ W+ +  + +P +  Q      + +  LF
Sbjct: 147 NTDLEETARKMMNQEWDSVKIDSSPDSAKQAAGLIEKSIFDLF 189


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,167,241
Number of Sequences: 27539
Number of extensions: 203020
Number of successful extensions: 509
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 12
length of query: 219
length of database: 12,573,161
effective HSP length: 79
effective length of query: 140
effective length of database: 10,397,580
effective search space: 1455661200
effective search space used: 1455661200
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)