GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001308-TA|BGIBMGA001308-PA|IPR004272|Odorant binding
protein, IPR013053|Hormone binding
         (219 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    80   2e-17

>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 79.8 bits (188), Expect = 2e-17
 Identities = 60/223 (26%), Positives = 108/223 (48%), Gaps = 14/223 (6%)

Query: 10  CSASDPN--LNECIQKVIEVVAPKFADGIAELGIAPLDPVQLGTVEVNNPALKIT----F 63
           C  S P    N+CI + +       A G+    I P++P+ + +V++      +T    +
Sbjct: 31  CDRSLPQKEYNQCIAEAVRDAVVSLAGGLKSFKILPIEPLAVDSVKIGESQGSVTLRQEY 90

Query: 64  TDTVVTGL-RGSKINSYKINLDKGKATID-FTANVTLKAHYVMDGQVLILPIRGNGPAKI 121
            +  + GL +  +I +Y I+ DK   + + +   V   A Y ++G+VL+LP+RG G + I
Sbjct: 91  KNIKLYGLTKNLEIKNYNIDWDKCILSSESYNPQVDFVADYKIEGKVLLLPVRGAGKSNI 150

Query: 122 KITNLRIV--VTYDFTTVAGHWVLTGYKDHYKMDRAQFK--FNNLFGGNKELAQTTEKFT 177
            + +L+    +  +     G   L   K   K + A+ K  F NLF GNKEL +   +F 
Sbjct: 151 TMYDLKSHNDIYCEKYEKNGETYLRIKKHAVKFNPAKVKLRFENLFDGNKELGEQMNRFI 210

Query: 178 NQNWEIIMQEIAPPALNQIISSCVEKV-KQLFGAVPATELLRP 219
           N+N E++ +E+   A  +  S    K+  ++F  VP  ++  P
Sbjct: 211 NENSELLFKEL-QAAYEETFSLVFTKIDNEIFNRVPFDKIFPP 252


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.397 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,163
Number of Sequences: 429
Number of extensions: 2556
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1
length of query: 219
length of database: 140,377
effective HSP length: 55
effective length of query: 164
effective length of database: 116,782
effective search space: 19152248
effective search space used: 19152248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 42 (21.0 bits)