Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001307-TA|BGIBMGA001307-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
         (154 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               176   8e-45
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                80   9e-16
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                55   2e-08
SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)                  31   0.56 
SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)         30   0.98 
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_58583| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  176 bits (428), Expect = 8e-45
 Identities = 76/130 (58%), Positives = 99/130 (76%), Gaps = 1/130 (0%)

Query: 24  EKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDL 83
           E  P  ++G ++GL  G HGFH+H +GDNTNGC SAG HFNP K++HGGPS   RHVGDL
Sbjct: 24  EGKPCKITGTIEGLKAGNHGFHIHVYGDNTNGCVSAGPHFNPFKKEHGGPSDENRHVGDL 83

Query: 84  GNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTGNAGGR 143
           GN+ A  D G   + + D+ ++L G +S++GR++VVHAD DDLG GGHE SKTTG+AGGR
Sbjct: 84  GNVVA-GDDGKACIDMTDALVTLVGEHSVVGRSVVVHADEDDLGRGGHEDSKTTGHAGGR 142

Query: 144 IACGVIGLAK 153
           +ACGVIG+ +
Sbjct: 143 LACGVIGITQ 152


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 79.8 bits (188), Expect = 9e-16
 Identities = 39/71 (54%), Positives = 49/71 (69%), Gaps = 4/71 (5%)

Query: 79  HVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTTG 138
           HVGDLGNI A ++   T    +D  + +     IIGR +VVHAD DDLG GGHELSK+TG
Sbjct: 1   HVGDLGNIIANQNGRAT-FRFEDKTVKVW---DIIGRAIVVHADEDDLGRGGHELSKSTG 56

Query: 139 NAGGRIACGVI 149
           N+G R+ CG+I
Sbjct: 57  NSGARVGCGII 67


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 55.2 bits (127), Expect = 2e-08
 Identities = 28/49 (57%), Positives = 34/49 (69%), Gaps = 1/49 (2%)

Query: 70  HGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLV 118
           HG P    RH+GDLGNIEA + +G+  VSI D  +SL G  SIIGR+LV
Sbjct: 2   HGAPEDKDRHLGDLGNIEA-DANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_9656| Best HMM Match : 7tm_1 (HMM E-Value=1.3e-23)
          Length = 710

 Score = 30.7 bits (66), Expect = 0.56
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 9/93 (9%)

Query: 42  HGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQD 101
           H  H++    + + C +  +  +  +  HGG  S++     +GN  +    G    S+ D
Sbjct: 309 HDNHLNPSSYDNHSCLANQSSLSDNQSSHGGNHSSL-----VGNQSS---HGGNHSSLDD 360

Query: 102 SQISLHGPNSIIGRTLVVHADPDDLGLGGHELS 134
           +Q SL G  SI+G     H + +  GLG ++ S
Sbjct: 361 NQSSLGGNQSILGDNQSSHGN-EKSGLGDNQSS 392



 Score = 26.6 bits (56), Expect = 9.1
 Identities = 29/124 (23%), Positives = 53/124 (42%), Gaps = 12/124 (9%)

Query: 23  DEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGD 82
           D +S +  +  + G  +  HG      GDN +   +  +    ++  HG   S++     
Sbjct: 360 DNQSSLGGNQSILGDNQSSHGNEKSGLGDNQSSLGNDQSSHGNDQSSHGNNQSSLGGNQS 419

Query: 83  L--GNIEAIEDS----GVTKVSIQDSQISLHGPNSIIG-RTLVVHADPDDLG-----LGG 130
           +  GN  +I D+    G  + S+   QISL    S +G    ++  +   LG     LGG
Sbjct: 420 ILGGNQSSIGDNQSSLGNDQSSLGGDQISLGDNQSSLGDNQSILGGNQSSLGGNQSSLGG 479

Query: 131 HELS 134
           +++S
Sbjct: 480 NQIS 483


>SB_24828| Best HMM Match : Peptidase_A17 (HMM E-Value=1.7e-23)
          Length = 1531

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 35/126 (27%), Positives = 57/126 (45%), Gaps = 12/126 (9%)

Query: 4   KAVCVLRGDVSGTVFFDQQDEKSP----VVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSA 59
           KA   + G + GTV F Q    +     + ++G  + L+   H   V   G+    C + 
Sbjct: 58  KATFSMSG-IRGTVTFTQSSPNTSTNIKLALTGVNETLSWQIHDLPVIYKGNAATTCNTV 116

Query: 60  --GAHFNPEKQDHGGPSSAVRH---VGDL-GNIEAIEDSGVTKVSIQDSQISLHGPNSII 113
             G  ++P+       S+A +    VGDL G    I+ + ++ V   DS + L G + I 
Sbjct: 117 ALGNLYDPDGTATAQCSAAQKKSCAVGDLRGKFGFIDGNNMSSV-FHDSNLPLTGRHGIF 175

Query: 114 GRTLVV 119
           GRTLV+
Sbjct: 176 GRTLVL 181


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 53   TNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIED 91
            T+  +SA  HF+    DH  P S V    D+  +E+  +
Sbjct: 3205 TSASSSAKVHFSNAASDHDEPQSPVNAFHDMKTLESFSE 3243


>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1604

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 12 DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHG--FHVHEFGDNTN 54
          DVSG+V  +Q   +S   V+  V G     HG  F +H    NT+
Sbjct: 44 DVSGSVTLEQSQSRSGPYVTVAVDGTRVVLHGAVFTIHNLTSNTD 88


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 8/23 (34%), Positives = 18/23 (78%)

Query: 19   FDQQDEKSPVVVSGEVQGLTKGK 41
            +D +D  + + ++GE++G+T+GK
Sbjct: 5974 YDSRDRFAKIYINGELKGVTRGK 5996


>SB_58583| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 101 DSQISLHGPNSIIGRTLVVHADPDDLGLGGHELSKTT 137
           D  +S    N + G  L    D  D GLG + +SKTT
Sbjct: 9   DILVSNAATNPVFGPLLQTTEDAWDKGLGAYSISKTT 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.314    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,732,790
Number of Sequences: 59808
Number of extensions: 245203
Number of successful extensions: 267
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 252
Number of HSP's gapped (non-prelim): 15
length of query: 154
length of database: 16,821,457
effective HSP length: 76
effective length of query: 78
effective length of database: 12,276,049
effective search space: 957531822
effective search space used: 957531822
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)