GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001307-TA|BGIBMGA001307-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
         (154 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.5  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.5  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 51  DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSG 93
           DN   C S G    P + D    + ++   G L  + ++   G
Sbjct: 655 DNLGSCGSMGDAHTPPEDDAESLNQSISSPGALSGLSSLTSPG 697


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/43 (23%), Positives = 17/43 (39%)

Query: 51  DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSG 93
           DN   C S G    P + D    + ++   G L  + ++   G
Sbjct: 547 DNLGSCGSMGDAHTPPEDDAESLNQSISSPGALSGLSSLTSPG 589


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.314    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,071
Number of Sequences: 317
Number of extensions: 1585
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 154
length of database: 114,650
effective HSP length: 52
effective length of query: 102
effective length of database: 98,166
effective search space: 10012932
effective search space used: 10012932
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)