Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001307-TA|BGIBMGA001307-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
(154 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 195 1e-50
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 194 2e-50
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 183 5e-47
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 142 1e-34
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 57 7e-09
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 38 0.003
11_01_0551 + 4361640-4363386,4363443-4363687 29 1.3
04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114... 29 2.2
11_06_0756 + 26952196-26952264,26952760-26953206,26954009-269553... 28 2.9
02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810 28 2.9
03_06_0131 - 31900700-31900992,31901039-31901720 28 3.8
01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997 27 5.1
06_03_0970 + 26424209-26424910,26425053-26425109,26425251-264254... 27 6.7
06_03_0558 - 22139878-22139895,22141073-22142404,22143355-221438... 27 6.7
03_06_0105 + 31675083-31675313,31676171-31676815 27 6.7
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111... 27 6.7
02_01_0176 + 1207792-1208081,1208212-1208329,1208495-1208668,120... 27 6.7
02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-57... 27 6.7
12_02_0196 - 15374814-15374997,15375304-15375547,15376035-153762... 27 8.9
04_04_0479 - 25524753-25525426,25525736-25525819,25526255-255264... 27 8.9
04_01_0489 + 6436641-6437966 27 8.9
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 195 bits (476), Expect = 1e-50
Identities = 92/150 (61%), Positives = 106/150 (70%), Gaps = 4/150 (2%)
Query: 4 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 61
KAV VL V GT+ F Q+ + P V+G V GL G HGFH+H GD TNGC S G
Sbjct: 121 KAVVVLGSSEIVKGTIHFVQEGD-GPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTGP 179
Query: 62 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 121
H+NP ++HG P RH GDLGN+ A ED GV + + DSQI L GPNSIIGR +VVHA
Sbjct: 180 HYNPAGKEHGAPEDETRHAGDLGNVTAGED-GVANIHVVDSQIPLTGPNSIIGRAVVVHA 238
Query: 122 DPDDLGLGGHELSKTTGNAGGRIACGVIGL 151
DPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 239 DPDDLGKGGHELSKTTGNAGGRVACGIIGL 268
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 194 bits (474), Expect = 2e-50
Identities = 94/150 (62%), Positives = 106/150 (70%), Gaps = 4/150 (2%)
Query: 4 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 61
KAV VL V GT+FF Q+ + P V+G V GL G HGFHVH GD TNGC S G
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGD-GPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTGP 61
Query: 62 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 121
HFNP ++HG P RH GDLGNI A D GV V++ DSQI L G +SIIGR +VVHA
Sbjct: 62 HFNPTGKEHGAPQDENRHAGDLGNITAGAD-GVANVNVSDSQIPLTGAHSIIGRAVVVHA 120
Query: 122 DPDDLGLGGHELSKTTGNAGGRIACGVIGL 151
DPDDLG GGHELSKTTGNAGGR+ACG+IGL
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 183 bits (446), Expect = 5e-47
Identities = 89/153 (58%), Positives = 102/153 (66%), Gaps = 4/153 (2%)
Query: 4 KAVCVLRG--DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 61
KAV VL+G V G V Q D++ P V+ V GLT G HGFH+HEFGD TNGC S G
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQ-DDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTGP 111
Query: 62 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 121
HFNP HG P VRH GDLGNI A GV + +I D QI L GPNS++GR VVH
Sbjct: 112 HFNPNNLTHGAPEDEVRHAGDLGNIVA-NAEGVAEATIVDKQIPLSGPNSVVGRAFVVHE 170
Query: 122 DPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 154
DDLG GGHELS +TGNAGGR+ACGV+GL +
Sbjct: 171 LEDDLGKGGHELSLSTGNAGGRLACGVVGLTPL 203
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 142 bits (344), Expect = 1e-34
Identities = 67/117 (57%), Positives = 77/117 (65%), Gaps = 1/117 (0%)
Query: 13 VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGG 72
V+G + F Q V G V GL G HGFH+H FGD TNGC S G HFNP + HG
Sbjct: 23 VAGALHFFQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTGPHFNPHNKSHGA 82
Query: 73 PSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLG 129
PS RHVGDLGNI A +D GV + I+D QISL GP+SI+GR +VVHAD DDLG G
Sbjct: 83 PSDDERHVGDLGNIVANKD-GVADIFIKDLQISLSGPHSILGRAVVVHADSDDLGRG 138
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 56.8 bits (131), Expect = 7e-09
Identities = 41/136 (30%), Positives = 64/136 (47%), Gaps = 12/136 (8%)
Query: 5 AVCVLRGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFN 64
AV +G V V Q +V GL+ GKHG+ ++EFGD T G S G +N
Sbjct: 167 AVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKVYN 226
Query: 65 PEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA--D 122
P P +GDLG +EA E G + S ++ + +IGR++ ++A D
Sbjct: 227 PSDYRSNKP------LGDLGTLEAGE-KGEAQFSASKEKLKV---VDLIGRSIALYATED 276
Query: 123 PDDLGLGGHELSKTTG 138
D G+ ++++ G
Sbjct: 277 RSDPGIAAAVIARSAG 292
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 38.3 bits (85), Expect = 0.003
Identities = 17/35 (48%), Positives = 18/35 (51%)
Query: 26 SPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAG 60
S + V V GL HGFHVH G TNGC G
Sbjct: 35 SLITVKENVSGLKPVLHGFHVHALGGTTNGCMRNG 69
>11_01_0551 + 4361640-4363386,4363443-4363687
Length = 663
Score = 29.5 bits (63), Expect = 1.3
Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Query: 51 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIE--AIEDSGVTKVSIQDS 102
D+ NG T GA PE GG A V ++G++E AI+ T+ S+ D+
Sbjct: 117 DDENGRTEGGALVKPES---GGGDEAASDVKEIGSLEQAAIDMKDTTEHSVGDT 167
>04_04_1405 - 33305948-33309676,33309749-33310468,33310533-33311439,
33334405-33334484
Length = 1811
Score = 28.7 bits (61), Expect = 2.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 108 GPNSIIGRTLVVHADPDDLGLGG 130
GP + +GR L+ +DP+D+G G
Sbjct: 1048 GPEATVGRPLLSSSDPEDIGTEG 1070
>11_06_0756 +
26952196-26952264,26952760-26953206,26954009-26955358,
26955400-26955408
Length = 624
Score = 28.3 bits (60), Expect = 2.9
Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 12/97 (12%)
Query: 60 GAHFNPEKQDH--GGPSSAVRHVGD--LGNIE---AIEDSGVTKVSIQDSQISLHGPNSI 112
GA +PE H G V D L NI A+ G+ V+ D+++SL
Sbjct: 222 GASHDPEALLHIAQGSRGTYSFVDDDNLANIAGALAVCLGGLKTVAAVDTRVSLKAAELS 281
Query: 113 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 149
G +V D GG+E S G A G + GV+
Sbjct: 282 GGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 313
>02_01_0367 + 2639024-2640247,2641399-2641536,2641754-2641810
Length = 472
Score = 28.3 bits (60), Expect = 2.9
Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)
Query: 51 DNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPN 110
D TS GAH +P + H PSS + + + S T VS++ ++ PN
Sbjct: 15 DIVKAATSPGAHSSPLRPAHSSPSSTLSEASNTSS------SSATSVSLKRARAPRKRPN 68
>03_06_0131 - 31900700-31900992,31901039-31901720
Length = 324
Score = 27.9 bits (59), Expect = 3.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 82 DLGNIEAIEDSGVTKVSIQDSQISLHGPNS 111
D+ ++ + DSG +I +S HGPNS
Sbjct: 120 DVDHLSILTDSGAVHRAISGEPVSEHGPNS 149
>01_04_0119 - 16230375-16231093,16231298-16231378,16231634-16231997
Length = 387
Score = 27.5 bits (58), Expect = 5.1
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 50 GDNTNGCTSAGAHFNPEKQDHGGPSSAVRHV 80
G+N NG S G H N + G P S + +V
Sbjct: 111 GNNNNGYRSQGVHANESWRIPGQPDSCIENV 141
>06_03_0970 +
26424209-26424910,26425053-26425109,26425251-26425478,
26425788-26425881,26425955-26426161,26426581-26426711,
26426943-26426992,26427125-26427432,26427548-26427651,
26427810-26428526,26429159-26429338,26429703-26429831
Length = 968
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Query: 29 VVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRH 79
++S V+ +GK G ++H GC G + + H P++A H
Sbjct: 488 LISNAVKFTHEGKVGINLHVLDKQLPGCRIEGGQLH--SKAHSAPAAAAEH 536
>06_03_0558 -
22139878-22139895,22141073-22142404,22143355-22143804,
22144247-22144315
Length = 622
Score = 27.1 bits (57), Expect = 6.7
Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 14/97 (14%)
Query: 60 GAHFNPEKQDH-GGPSSAVRHVGDLGNIEAIEDS------GVTKVSIQDSQISLHGPNSI 112
GA +PE H S D GN++ I + G+ V+ D+++SL +
Sbjct: 223 GAAHDPEALLHIAQESRGTYSFVDDGNLDKIAGALAVCLGGLKTVAAVDTRVSLK--TAE 280
Query: 113 IGRTLVVHADPDDLGLGGHELSKTTGNAGGRIACGVI 149
+G +V D GG+E S G A G + GV+
Sbjct: 281 LGGARIVRVDS-----GGYESSVACGGASGEVVVGVL 312
>03_06_0105 + 31675083-31675313,31676171-31676815
Length = 291
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 45 HVHEFGDNTNGCTSAGAHFNPEKQDHGGP 73
HVH + T GC + AH +GGP
Sbjct: 219 HVHPYTPYTFGCVTPLAHLTHSGYGYGGP 247
>03_01_0141 +
1116833-1117082,1117658-1118574,1119417-1119579,
1119668-1120497,1120562-1120570
Length = 722
Score = 27.1 bits (57), Expect = 6.7
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
Query: 54 NGCTSAGAHFNP---EKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDS--QISLHG 108
N C HF+ E++DH G +A RH D D+G+ + +S + G
Sbjct: 233 NPCRFNIGHFDSVQDEQKDHAGFQTAYRHCSDWN--RCTNDTGIVGNYLANSSGETCNVG 290
Query: 109 PNSIIGR 115
NSI GR
Sbjct: 291 ENSITGR 297
>02_01_0176 +
1207792-1208081,1208212-1208329,1208495-1208668,
1209588-1209751,1209861-1209948,1210125-1210178,
1210798-1210884
Length = 324
Score = 27.1 bits (57), Expect = 6.7
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 17 VFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSA 76
V+ ++Q EK + G + KGKH H +E T A E++D G PS+A
Sbjct: 30 VWLEEQYEKVEKIGEGTYGVVYKGKHR-HTNE--------TIALKKIRLEQEDEGVPSTA 80
Query: 77 VRHVGDLGNIE 87
+R + L ++
Sbjct: 81 IREISLLKEMQ 91
>02_01_0084 - 573638-574305,574705-574900,574997-577246,578053-579174,
579266-579370,579975-580028,580244-580344,580454-581423,
582030-582203,582341-582643,582719-582856,582993-583247,
584230-584370,585008-585289,585395-585540,585627-585690,
585723-585799,586285-586301,587728-587867,587972-588029,
588121-588218,588727-588776,589260-589743
Length = 2630
Score = 27.1 bits (57), Expect = 6.7
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 87 EAIEDSGVTKVSIQDSQISLHGPNSIIGR 115
E +E G++ +IQD Q + PNS+ G+
Sbjct: 2097 EELEQEGMSSSAIQDLQPEMQPPNSVQGQ 2125
>12_02_0196 -
15374814-15374997,15375304-15375547,15376035-15376237,
15377275-15377502,15377674-15377819,15378020-15378233,
15378410-15378543,15378986-15379135,15379892-15380155,
15380962-15381051
Length = 618
Score = 26.6 bits (56), Expect = 8.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 127 GLGGHELSKTTGNAGGRIACGVIGLAK 153
GL G ++ T G+ GG I G++GL K
Sbjct: 335 GLLGKKIKDTFGHIGGPILGGLVGLKK 361
>04_04_0479 -
25524753-25525426,25525736-25525819,25526255-25526483,
25526910-25527357,25528462-25528569,25528681-25528806,
25528887-25528981,25529062-25529147,25529253-25529408,
25529523-25529766
Length = 749
Score = 26.6 bits (56), Expect = 8.9
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 9/77 (11%)
Query: 34 VQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIE-DS 92
+QG T K G + G G T A GG + A R VGD+ + +E
Sbjct: 1 MQGTTTTKAGRNGDRAGTEAPGATRA-------TDGRGGAAVAARKVGDMRGVSGVEAKD 53
Query: 93 GVTKVSIQDSQISLHGP 109
+T V++Q S +++ P
Sbjct: 54 SLTIVALQ-SPVTVERP 69
>04_01_0489 + 6436641-6437966
Length = 441
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 86 IEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADPDDLGLGGHE 132
+ A+E + +T+ S Q + + + P+S+IGR D D+ G E
Sbjct: 208 VAAMEKAMLTQESKQFAYLDVTIPSSVIGRVKAAFDDVGDVARSGGE 254
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.136 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,360,465
Number of Sequences: 37544
Number of extensions: 238790
Number of successful extensions: 354
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 21
length of query: 154
length of database: 14,793,348
effective HSP length: 76
effective length of query: 78
effective length of database: 11,940,004
effective search space: 931320312
effective search space used: 931320312
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 56 (26.6 bits)
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