GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001307-TA|BGIBMGA001307-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
         (154 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    27   0.085
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.4  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   5.6  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   7.4  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   7.4  
X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.           20   9.8  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   9.8  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 27.1 bits (57), Expect = 0.085
 Identities = 11/46 (23%), Positives = 23/46 (50%)

Query: 75  SAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVH 120
           S +   GD+G+I  + + G  +VS     +S   P  ++G   +++
Sbjct: 127 STIIREGDVGSIVYVMEEGKVEVSRDGKYLSTLAPGKVLGELAILY 172


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 12/41 (29%), Positives = 22/41 (53%)

Query: 83   LGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADP 123
            L  + ++E +GV+ +  Q+ Q SL   +S     ++ HA P
Sbjct: 1230 LDGVGSVEKTGVSTLRGQERQRSLFKDSSPATALMLQHAPP 1270


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/32 (25%), Positives = 15/32 (46%)

Query: 44  FHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSS 75
           F+  ++GD  N C       + E+ ++ G  S
Sbjct: 457 FYQSQYGDPINNCEIKAGEIDAERLNNQGIES 488


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 50 GDNTNGCTSAGAHFNPEKQDHGGPSSAV 77
          G N+ G  +AG H N       G + AV
Sbjct: 67 GPNSPGSFTAGCHSNLLSTSPSGQNKAV 94


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
          protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 50 GDNTNGCTSAGAHFNPEKQDHGGPSSAV 77
          G N+ G  +AG H N       G + AV
Sbjct: 67 GPNSPGSFTAGCHSNLLSTSPSGQNKAV 94


>X91509-1|CAA62809.1|  103|Apis mellifera histone H4 protein.
          Length = 103

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 35 QGLTKGKHGFHVHEFGDNTNGCT 57
          +GL KG    H    GDN  G T
Sbjct: 9  KGLGKGGAKRHRKVLGDNIQGIT 31


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 9.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 29  VVSGEVQGLTKGKHGFHVHEFGDNT 53
           V SGE   +   K GFH+  + +N+
Sbjct: 191 VHSGEEVNIFLDKKGFHMDGYTNNS 215


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.314    0.136    0.404 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,055
Number of Sequences: 429
Number of extensions: 1848
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 154
length of database: 140,377
effective HSP length: 53
effective length of query: 101
effective length of database: 117,640
effective search space: 11881640
effective search space used: 11881640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.0 bits)
S2: 40 (20.2 bits)