Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001307-TA|BGIBMGA001307-PA|IPR001424|Superoxide
dismutase, copper/zinc binding
(154 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) / ... 190 4e-49
At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloropla... 188 1e-48
At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/z... 171 2e-43
At1g12520.1 68414.m01449 superoxide dismutase copper chaperone, ... 51 3e-07
At5g59980.1 68418.m07522 RNase P subunit p30 family protein cont... 32 0.15
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r... 31 0.46
At1g18560.1 68414.m02315 hAT dimerisation domain-containing prot... 31 0.46
At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transfera... 29 1.4
At1g34060.1 68414.m04222 alliinase family protein contains Pfam ... 29 1.8
At1g47786.1 68414.m05316 acyl-protein thioesterase-related simil... 28 3.2
At3g16810.1 68416.m02147 pumilio/Puf RNA-binding domain-containi... 27 5.6
At5g13650.2 68418.m01585 elongation factor family protein contai... 26 9.8
At5g13650.1 68418.m01584 elongation factor family protein contai... 26 9.8
At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family pr... 26 9.8
At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family pr... 26 9.8
At3g48750.1 68416.m05324 cell division control protein 2 homolog... 26 9.8
At1g05440.1 68414.m00552 expressed protein ; expression supporte... 26 9.8
>At1g08830.1 68414.m00983 superoxide dismutase [Cu-Zn] (SODCC) /
copper/zinc superoxide dismutase (CSD1) identical to
SWISS-PROT: P24704
Length = 152
Score = 190 bits (463), Expect = 4e-49
Identities = 91/151 (60%), Positives = 103/151 (68%), Gaps = 4/151 (2%)
Query: 3 AKAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAG 60
AK V VL V+GT+FF Q+ + VSG V GL G HGFHVH GD TNGC S G
Sbjct: 2 AKGVAVLNSSEGVTGTIFFTQEGD-GVTTVSGTVSGLKPGLHGFHVHALGDTTNGCMSTG 60
Query: 61 AHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVH 120
HFNP+ + HG P A RH GDLGNI + D G +I D QI L GPNSI+GR +VVH
Sbjct: 61 PHFNPDGKTHGAPEDANRHAGDLGNI-TVGDDGTATFTITDCQIPLTGPNSIVGRAVVVH 119
Query: 121 ADPDDLGLGGHELSKTTGNAGGRIACGVIGL 151
ADPDDLG GGHELS TGNAGGR+ACG+IGL
Sbjct: 120 ADPDDLGKGGHELSLATGNAGGRVACGIIGL 150
>At2g28190.1 68415.m03423 superoxide dismutase [Cu-Zn], chloroplast
(SODCP) / copper/zinc superoxide dismutase (CSD2)
identical to GP:3273753:AF061519
Length = 216
Score = 188 bits (459), Expect = 1e-48
Identities = 91/153 (59%), Positives = 103/153 (67%), Gaps = 4/153 (2%)
Query: 4 KAVCVLRG--DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 61
KAV VL+G DV G V Q D+ P V+ + GLT G HGFH+HEFGD TNGC S G
Sbjct: 66 KAVAVLKGTSDVEGVVTLTQ-DDSGPTTVNVRITGLTPGPHGFHLHEFGDTTNGCISTGP 124
Query: 62 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 121
HFNP HG P RH GDLGNI A D GV + +I D+QI L GPNS++GR VVH
Sbjct: 125 HFNPNNMTHGAPEDECRHAGDLGNINANAD-GVAETTIVDNQIPLTGPNSVVGRAFVVHE 183
Query: 122 DPDDLGLGGHELSKTTGNAGGRIACGVIGLAKI 154
DDLG GGHELS TTGNAGGR+ACGVIGL +
Sbjct: 184 LKDDLGKGGHELSLTTGNAGGRLACGVIGLTPL 216
>At5g18100.1 68418.m02125 superoxide dismutase [Cu-Zn] / copper/zinc
superoxide dismutase (CSD3) identical to copper/zinc
superoxide dismutase GI:3273755
Length = 164
Score = 171 bits (415), Expect = 2e-43
Identities = 82/150 (54%), Positives = 103/150 (68%), Gaps = 4/150 (2%)
Query: 4 KAVCVLRGD--VSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGA 61
+AV ++ GD V G + F QD V+G++ GL+ G HGFH+H FGD TNGC S G
Sbjct: 9 RAVALIAGDNNVRGCLQF-VQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGP 67
Query: 62 HFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHA 121
HFNP + HG P+ RH GDLGNI A +GV ++ I+D I L G SI+GR +VVHA
Sbjct: 68 HFNPLNRVHGPPNEEERHAGDLGNILA-GSNGVAEILIKDKHIPLSGQYSILGRAVVVHA 126
Query: 122 DPDDLGLGGHELSKTTGNAGGRIACGVIGL 151
DPDDLG GGH+LSK+TGNAG R+ CG+IGL
Sbjct: 127 DPDDLGKGGHKLSKSTGNAGSRVGCGIIGL 156
>At1g12520.1 68414.m01449 superoxide dismutase copper chaperone,
putative similar to copper chaperone for superoxide
dismutase [Homo sapiens] gi|2431868|gb|AAC51764
Length = 254
Score = 51.2 bits (117), Expect = 3e-07
Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 11/122 (9%)
Query: 5 AVCVLRG-DVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHGFHVHEFGDNTNGCTSAGAHF 63
AV +G D+ G V F Q + + GL+ G H + ++E+GD TNG S G+ +
Sbjct: 98 AVAEFKGPDIFGVVRFAQVSMEL-ARIEANFTGLSPGTHSWCINEYGDLTNGAASTGSLY 156
Query: 64 NPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHGPNSIIGRTLVVHADP 123
NP QD G +GDLG +EA + +G S + ++ + +IGR +VV+
Sbjct: 157 NP-FQDQTG----TEPLGDLGTLEA-DKNGEAFYSGKKEKLKV---ADLIGRAVVVYKTD 207
Query: 124 DD 125
D+
Sbjct: 208 DN 209
>At5g59980.1 68418.m07522 RNase P subunit p30 family protein
contains Pfam PF01876: RNase P subunit p30
Length = 581
Score = 32.3 bits (70), Expect = 0.15
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 57 TSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVS 98
TS G +P K DHG P S V V ++GN E++ V + S
Sbjct: 458 TSEGGSMSPSKSDHGIPQSPV-EVNNMGNAAFEEEASVDENS 498
>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
response factor 30 (GI:20145855) {Arabidopsis thaliana}
Length = 313
Score = 30.7 bits (66), Expect = 0.46
Identities = 20/67 (29%), Positives = 23/67 (34%)
Query: 45 HVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQI 104
H G NG +S H + H G SS H G+ SG SI S
Sbjct: 89 HSSGTGSTHNGHSSGSNHSSGTGSTHNGHSSGSNHSSSTGSTHNNHSSGSNHSSIVGSTH 148
Query: 105 SLHGPNS 111
HG S
Sbjct: 149 KNHGSGS 155
>At1g18560.1 68414.m02315 hAT dimerisation domain-containing protein
/ BED zinc finger domain-containing protein /
transposase-related weak similarity to Tam3-transposase
[Antirrhinum majus] GI:16064; contains Pfam profiles
PF02892: BED zinc finger, PF05699: hAT family
dimerisation domain
Length = 676
Score = 30.7 bits (66), Expect = 0.46
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 109 PNSIIGRTLVVHADPDDLGLGGHELSKT 136
P +++ TLV H+DP D+GLG + S +
Sbjct: 3 PKAMMDMTLVPHSDPIDIGLGSSDKSNS 30
>At3g22250.1 68416.m02812 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 461
Score = 29.1 bits (62), Expect = 1.4
Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 64 NPEKQDHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQISLHG------PNSII 113
N +++ G + + H+G L N EA + +TK S + +S G PNS+I
Sbjct: 231 NDLNKENNGQNPQILHLGPLHNQEATNNITITKTSFWEEDMSCLGWLQEQNPNSVI 286
>At1g34060.1 68414.m04222 alliinase family protein contains Pfam
profiles: PF04864 allinase C-terminal domain, PF04863
alliinase EGF-like domain
Length = 463
Score = 28.7 bits (61), Expect = 1.8
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 118 VVHADPDDLGLGGHELSKTTGNAGGRIACGVI 149
+ H +DL L LSKTTG+AG R G++
Sbjct: 270 ITHPVDEDLSL--FSLSKTTGHAGSRFGWGLV 299
>At1g47786.1 68414.m05316 acyl-protein thioesterase-related similar
to hypothetical protein GB:AAD55623 GI:5903064 from
[Arabidopsis thaliana] contains similarity to
acyl-protein thioesterase-1 [Homo sapiens]
gi|9965372|gb|AAG10063
Length = 186
Score = 27.9 bits (59), Expect = 3.2
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 73 PSSAVRHVGDLGNIEAIEDSGVTKVS--IQDSQISLHGPNSIIGRTLVVHADPDDLGLG 129
P++ R V LG +E + ++S +QD ++SLH I HA P+ G+G
Sbjct: 89 PTAPRRPVTILGGMETNAWFDIAEISENMQDDEVSLHHAALSIANLFSDHASPNIGGMG 147
>At3g16810.1 68416.m02147 pumilio/Puf RNA-binding
domain-containing protein contains Pfam profile:PF00806
Pumilio-family RNA binding domains
Length = 641
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/34 (41%), Positives = 16/34 (47%)
Query: 10 RGDVSGTVFFDQQDEKSPVVVSGEVQGLTKGKHG 43
R D + FD K P +VSGE Q K K G
Sbjct: 14 RKDTDSSAKFDSLKSKKPKLVSGEQQQHVKPKFG 47
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 26.2 bits (55), Expect = 9.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 69 DHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQ-----ISLHGPNSIIGRTLVVHADP 123
D GP + DLG++ A ED T ++ +Q G + G+ + +H P
Sbjct: 549 DSYGPWAGDISTRDLGSLVAFEDGTSTSYALASAQERGQMFVGSGVDVYKGQIVGIHQRP 608
Query: 124 DDLGL 128
DLGL
Sbjct: 609 GDLGL 613
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 26.2 bits (55), Expect = 9.8
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
Query: 69 DHGGPSSAVRHVGDLGNIEAIEDSGVTKVSIQDSQ-----ISLHGPNSIIGRTLVVHADP 123
D GP + DLG++ A ED T ++ +Q G + G+ + +H P
Sbjct: 548 DSYGPWAGDISTRDLGSLVAFEDGTSTSYALASAQERGQMFVGSGVDVYKGQIVGIHQRP 607
Query: 124 DDLGL 128
DLGL
Sbjct: 608 GDLGL 612
>At4g36540.2 68417.m05189 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 302
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 45 HVHEFG---DNTNGCTSAGAHFNPEKQDHGGPSSAV 77
H EFG D T+GC S + F+ E + G S A+
Sbjct: 53 HFPEFGPDYDTTDGCISRTSSFHMEPVKNNGHSRAI 88
>At4g36540.1 68417.m05188 basic helix-loop-helix (bHLH) family
protein contains Pfam domain, PF00010: Helix-loop-helix
DNA-binding domain
Length = 304
Score = 26.2 bits (55), Expect = 9.8
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 45 HVHEFG---DNTNGCTSAGAHFNPEKQDHGGPSSAV 77
H EFG D T+GC S + F+ E + G S A+
Sbjct: 53 HFPEFGPDYDTTDGCISRTSSFHMEPVKNNGHSRAI 88
>At3g48750.1 68416.m05324 cell division control protein 2 homolog
A (CDC2A) identical to cell division control protein 2
homolog A [Arabidopsis thaliana] SWISS-PROT:P24100
Length = 294
Score = 26.2 bits (55), Expect = 9.8
Identities = 15/55 (27%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 33 EVQGLTKGKHGFHVHEFGDNTNGCTSAGAHFNPEKQDHGGPSSAVRHVGDLGNIE 87
+V+ + +G +G V++ D T A E++D G PS+A+R + L ++
Sbjct: 6 KVEKIGEGTYGV-VYKARDKVTNETIALKKIRLEQEDEGVPSTAIREISLLKEMQ 59
>At1g05440.1 68414.m00552 expressed protein ; expression supported
by MPSS
Length = 393
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 26 SPVVVSGEVQGLTKGKHGFHVHE 48
S V+SG V T+GK G+ +HE
Sbjct: 286 SITVLSGRVTEWTEGKFGYSIHE 308
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.314 0.136 0.404
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,156,771
Number of Sequences: 28952
Number of extensions: 181489
Number of successful extensions: 287
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 273
Number of HSP's gapped (non-prelim): 17
length of query: 154
length of database: 12,070,560
effective HSP length: 75
effective length of query: 79
effective length of database: 9,899,160
effective search space: 782033640
effective search space used: 782033640
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)
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