Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001306-TA|BGIBMGA001306-PA|IPR007114|Major facilitator
superfamily, IPR005829|Sugar transporter superfamily, IPR011701|Major
facilitator superfamily MFS_1
         (356 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory recept...    23   4.4  
AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory recept...    23   4.4  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   4.4  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    22   7.8  

>AM292360-1|CAL23172.2|  427|Tribolium castaneum gustatory receptor
           candidate 39 protein.
          Length = 427

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 146 FKDKNL-TTNFACMSWIYFVCGLGYY 170
           FK+  L    F CM+ +Y +C  G++
Sbjct: 310 FKEAGLFMIAFYCMTLLYIICNEGHH 335


>AM292331-1|CAL23143.2|  437|Tribolium castaneum gustatory receptor
           candidate 10 protein.
          Length = 437

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)

Query: 146 FKDKNL-TTNFACMSWIYFVCGLGYY 170
           FK+  L    F CM+ +Y +C  G++
Sbjct: 310 FKEAGLFMIAFYCMTLLYIICNEGHH 335


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 162 YFVCGLGYYGVSEYISGMSKDIHRNVAIS-GMLI 194
           YF+ GL  +G   YI+     +  NVAIS G LI
Sbjct: 514 YFMIGLNSHGFRFYIACGIMILVANVAISFGYLI 547


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 21.8 bits (44), Expect = 7.8
 Identities = 7/18 (38%), Positives = 12/18 (66%)

Query: 19  GGAMVTAYVLCIEYSGVN 36
           GGA+ T  V+  +Y G++
Sbjct: 372 GGALTTFLVILFQYGGIH 389


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.327    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,718
Number of Sequences: 317
Number of extensions: 3353
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 4
length of query: 356
length of database: 114,650
effective HSP length: 58
effective length of query: 298
effective length of database: 96,264
effective search space: 28686672
effective search space used: 28686672
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)