Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001306-TA|BGIBMGA001306-PA|IPR007114|Major facilitator
superfamily, IPR005829|Sugar transporter superfamily, IPR011701|Major
facilitator superfamily MFS_1
         (356 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   4.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   4.0  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   7.0  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   7.0  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   9.3  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 205 LKRLYRRTFLMSTCFLSGIFMIVVISTDASSTWMRLIMACICN-CFFFLSFI----IVFL 259
           L R  +  F+   CF+S +  +  I+      +  L    +   C  FL F     I + 
Sbjct: 410 LLRKRKELFIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAISWA 469

Query: 260 YGVELFPTSIRNSV 273
           +GV  F   IR+ +
Sbjct: 470 FGVNRFYDGIRDMI 483


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 4.0
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 205 LKRLYRRTFLMSTCFLSGIFMIVVISTDASSTWMRLIMACICN-CFFFLSFI----IVFL 259
           L R  +  F+   CF+S +  +  I+      +  L    +   C  FL F     I + 
Sbjct: 463 LLRKRKELFIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLLFLMFFECIAISWA 522

Query: 260 YGVELFPTSIRNSV 273
           +GV  F   IR+ +
Sbjct: 523 FGVNRFYDGIRDMI 536


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 160 WIYFVCGLGYYGVSEYISGMS 180
           W Y+    G + +SE +SG S
Sbjct: 437 WFYYYTYKGAHSISEIMSGTS 457


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 7.0
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 160 WIYFVCGLGYYGVSEYISGMS 180
           W Y+    G + +SE +SG S
Sbjct: 437 WFYYYTYKGAHSISEIMSGTS 457


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 21.8 bits (44), Expect = 9.3
 Identities = 11/45 (24%), Positives = 22/45 (48%)

Query: 220 LSGIFMIVVISTDASSTWMRLIMACICNCFFFLSFIIVFLYGVEL 264
           ++G++MI+  +        R     +CN +   S++I F Y + L
Sbjct: 782 INGVWMIIDPAKAMHHYPTREDNLLVCNSYVDASYMIAFAYPIML 826


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,897
Number of Sequences: 429
Number of extensions: 3845
Number of successful extensions: 11
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 5
length of query: 356
length of database: 140,377
effective HSP length: 58
effective length of query: 298
effective length of database: 115,495
effective search space: 34417510
effective search space used: 34417510
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 44 (21.8 bits)