Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001305-TA|BGIBMGA001305-PA|undefined
         (95 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)                       69   6e-13
SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)                 48   2e-06
SB_42934| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   2.3  
SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)                 27   3.0  
SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   6.9  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     25   9.2  

>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
          Length = 687

 Score = 68.9 bits (161), Expect = 6e-13
 Identities = 34/81 (41%), Positives = 45/81 (55%)

Query: 15  PKKSRSDLAIYAMVTATAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFLDDFWG 74
           P    S L     +   ++L Y NS +GDFV DD  A++ N D+     +  LF+ DFWG
Sbjct: 44  PLPELSRLHASLTIAIVSLLCYWNSCNGDFVFDDSEAILNNKDLRPEAPIWTLFIHDFWG 103

Query: 75  SPMADVNSHKSYRPLTTLSFR 95
             +    SHKSYRPLT L+FR
Sbjct: 104 GKLDSNESHKSYRPLTVLTFR 124


>SB_59116| Best HMM Match : TPR_1 (HMM E-Value=6.7e-15)
          Length = 884

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 19/34 (55%), Positives = 25/34 (73%)

Query: 62  NSLKQLFLDDFWGSPMADVNSHKSYRPLTTLSFR 95
           +SL  +F +DFWG P+   +SHKSYRP T L+FR
Sbjct: 292 SSLTSIFRNDFWGEPLDSNHSHKSYRPATILTFR 325


>SB_42934| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 75

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/20 (60%), Positives = 13/20 (65%)

Query: 67 LFLDDFWGSPMADVNSHKSY 86
          LFLD    +P  DVNS KSY
Sbjct: 50 LFLDQCKATPTPDVNSEKSY 69


>SB_37006| Best HMM Match : 7tm_1 (HMM E-Value=1.4e-22)
          Length = 407

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 41  HGDFVHDDIPAVVTNGD--VVGTNSLKQLFLDDFWGS 75
           H   VHD IPA+ +N    V G+ +++ L +  +W S
Sbjct: 249 HRARVHDTIPAIPSNQSQGVQGSKTIRGLNISKYWKS 285


>SB_42963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 397

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 8/25 (32%), Positives = 15/25 (60%)

Query: 39  SLHGDFVHDDIPAVVTNGDVVGTNS 63
           ++H + +HD  P + T G  V +N+
Sbjct: 245 TMHSELLHDSAPTIPTGGTSVRSNT 269


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)

Query: 22   LAIYAMVTATAVLSYVNSLHGDFVHDDI 49
            ++I+A +   AVL  V  +H  ++HD +
Sbjct: 1093 ISIHAQLHHYAVLQQVQMIHNPYLHDQV 1120


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,827
Number of Sequences: 59808
Number of extensions: 110532
Number of successful extensions: 193
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 6
length of query: 95
length of database: 16,821,457
effective HSP length: 70
effective length of query: 25
effective length of database: 12,634,897
effective search space: 315872425
effective search space used: 315872425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)