Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001305-TA|BGIBMGA001305-PA|undefined
         (95 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   6.0  
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             20   6.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   7.9  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   7.9  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   7.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
          protein.
          Length = 1124

 Score = 19.8 bits (39), Expect = 6.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 12 EHPPKKSRSDLAIYAMVTAT 31
          EH  KKS++ LA+ A    T
Sbjct: 72 EHKKKKSKTILAVNAEADIT 91


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 19.8 bits (39), Expect = 6.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)

Query: 12 EHPPKKSRSDLAIYAMVTAT 31
          EH  KKS++ LA+ A    T
Sbjct: 72 EHKKKKSKTILAVNAEADIT 91


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 59  VGTNSLKQLFLDDFWGSPMADVNSHKSYRPLTTLS 93
           V T S+   F+ + W      VN  +SY  + T S
Sbjct: 80  VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTS 114


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 59  VGTNSLKQLFLDDFWGSPMADVNSHKSYRPLTTLS 93
           V T S+   F+ + W      VN  +SY  + T S
Sbjct: 80  VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTS 114


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
          subunit protein.
          Length = 365

 Score = 19.4 bits (38), Expect = 7.9
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 59 VGTNSLKQLFLDDFWGSPMADVNSHKSYRPLTTLS 93
          V T S+   F+ + W      VN  +SY  + T S
Sbjct: 19 VETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTS 53


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,278
Number of Sequences: 429
Number of extensions: 896
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 95
length of database: 140,377
effective HSP length: 49
effective length of query: 46
effective length of database: 119,356
effective search space:  5490376
effective search space used:  5490376
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.4 bits)
S2: 38 (19.4 bits)