GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001305-TA|BGIBMGA001305-PA|undefined
         (95 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    26   1.1  
SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase |Schizos...    25   1.5  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    24   3.4  
SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces p...    24   3.4  
SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces pom...    23   6.0  
SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|ch...    23   6.0  
SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1 |Schizosaccha...    23   6.0  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    23   6.0  
SPBC19G7.09 |ulp1||SUMO deconjugating enzyme Ulp1|Schizosaccharo...    23   7.9  

>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 1.1
 Identities = 12/43 (27%), Positives = 21/43 (48%)

Query: 17  KSRSDLAIYAMVTATAVLSYVNSLHGDFVHDDIPAVVTNGDVV 59
           K ++DL +Y M + T  + Y N   G  + D +  V +   +V
Sbjct: 636 KCKNDLVVYVMDSVTGSIVYQNKHQGIILFDKVYGVFSENWLV 678


>SPAC22F8.05 |||alpha,alpha-trehalose-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 891

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)

Query: 28  VTATAVLSYVNSLHGDFVHDDIPAVVTNGDV 58
           V  + +++ +NS  GDF  D +P  + + D+
Sbjct: 470 VAISDIVTRINSAFGDFSLDHLPVTILSSDL 500


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 65  KQLFLDDFWGSPMADVNSHKSYRPLTTLSFR 95
           K+  + + WG  + +  + KSYRP    +FR
Sbjct: 186 KRAHMINAWGYAIPEKPTEKSYRPTHRAAFR 216


>SPBP8B7.29 |||para-aminobenzoate synthase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 718

 Score = 24.2 bits (50), Expect = 3.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 70  DDFWGSPMADVNSHKSYRPLTTLSF 94
           +D W +    +N HK+ +P T L F
Sbjct: 314 NDLWSTVADFMNQHKAIKPDTNLPF 338


>SPBP4H10.17c |||carboxyl methyl esterase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 341

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 7/14 (50%), Positives = 12/14 (85%)

Query: 42  GDFVHDDIPAVVTN 55
           G FVH+D+PA +++
Sbjct: 303 GHFVHEDVPAKISS 316


>SPAC5H10.10 |||NADPH dehydrogenase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 392

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 11/40 (27%), Positives = 14/40 (35%)

Query: 44  FVHDDIPAVVTNGDVVGTNSLKQLFLDDFWGSPMADVNSH 83
           ++H   P    NG V  T     L   + WG P      H
Sbjct: 282 YLHAIEPRQYWNGHVHITQEKNTLIYKNLWGDPFITAGGH 321


>SPBC543.07 |pek1|skh1, mkk1|MAP kinase kinase Pek1
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 363

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 4/34 (11%)

Query: 31 TAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSL 64
          T V S++  L  D +H+    +VTNG ++  NSL
Sbjct: 56 TFVPSFLEELDDDHLHE----LVTNGGILYMNSL 85


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
          reductase AKR3C2|Schizosaccharomyces pombe|chr
          1|||Manual
          Length = 284

 Score = 23.4 bits (48), Expect = 6.0
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 28 VTATAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQ 66
          +  T V S  N+L   F+H D   V  N + VG  +LK+
Sbjct: 29 INRTIVDSVKNALAAGFIHIDCAEVYGNEEEVGV-ALKE 66


>SPBC19G7.09 |ulp1||SUMO deconjugating enzyme
           Ulp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 568

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 18  SRSDLAIYAMVTATAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFLDDFWGSPM 77
           +R  LA++   T++  LS+ NS+  D ++   P   ++  +  TNS      D       
Sbjct: 185 NRLQLAVFKETTSST-LSHGNSVEADEINSFNPTPFSSSPLHFTNSSPNPNSDIVTPDKQ 243

Query: 78  AD-VNSHKSYRPL 89
            D V+ H  Y+ L
Sbjct: 244 LDVVSEHARYKHL 256


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 438,775
Number of Sequences: 5004
Number of extensions: 16258
Number of successful extensions: 41
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 34
Number of HSP's gapped (non-prelim): 9
length of query: 95
length of database: 2,362,478
effective HSP length: 62
effective length of query: 33
effective length of database: 2,052,230
effective search space: 67723590
effective search space used: 67723590
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 47 (23.0 bits)