GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001305-TA|BGIBMGA001305-PA|undefined
         (95 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0885 - 28505628-28505767,28505892-28505970,28506048-285061...    30   0.31 
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250...    28   1.3  
09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    27   2.9  
02_04_0230 + 21103524-21103746,21105393-21105661,21105845-211060...    27   2.9  
09_02_0519 - 10150954-10152006                                         26   3.8  
11_04_0136 - 13849051-13849181,13850649-13851047,13851372-138514...    26   5.1  
11_04_0134 - 13812569-13812699,13814167-13814565,13814890-138149...    26   5.1  

>03_05_0885 -
           28505628-28505767,28505892-28505970,28506048-28506163,
           28506588-28506654,28507361-28507456,28508729-28508838,
           28508983-28509070,28510109-28510183,28510401-28510445,
           28510521-28510595,28511392-28511763
          Length = 420

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 27  MVTATAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFLDD---FWGSP 76
           +++    L   N +HGD   D++    T    +G  S+ Q+F DD    W SP
Sbjct: 245 IISGVMYLHSHNIIHGDIKPDNLLVTSTGSVKIGDFSVSQIFEDDDDLLWRSP 297


>03_01_0319 -
           2499470-2499598,2499681-2499746,2499830-2499937,
           2500125-2500259,2500763-2500840,2500994-2501044,
           2501805-2501879,2501975-2502037,2503048-2503137,
           2503215-2503406,2503498-2503591,2503776-2504279,
           2504415-2504614,2504712-2504756,2505023-2505082,
           2505476-2505520,2505858-2505941,2506121-2506318,
           2506960-2507667
          Length = 974

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 8   ALRDEHPPKKSRSDLAIYAMVTATAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQL 67
           AL   HP  K     A  A      + SY+ SL  D     I  V +N D V    LK  
Sbjct: 860 ALAKRHPIYKCNEVQAEAAWQFLNVMRSYLESLCSDLPSHTITNVQSNNDRVSL-LLKDS 918

Query: 68  FLDDF 72
           F+D F
Sbjct: 919 FIDSF 923


>09_03_0058 + 11950668-11950701,11951068-11951106,11951586-11951982,
            11952016-11952314,11953743-11956795
          Length = 1273

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 34   LSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFLD 70
            L  +N LHG    D +  V +  +V G    K+++LD
Sbjct: 970  LKNMNHLHGGLEIDGLRNVTSREEVAGAELAKKIYLD 1006


>02_04_0230 +
           21103524-21103746,21105393-21105661,21105845-21106009,
           21106081-21106203,21107261-21107473
          Length = 330

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/37 (29%), Positives = 20/37 (54%)

Query: 31  TAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQL 67
           ++ +  +    G+ + D +  V T GD+VG N LK +
Sbjct: 119 SSTIETIKEFFGEKIVDHMILVFTYGDLVGENKLKSM 155


>09_02_0519 - 10150954-10152006
          Length = 350

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)

Query: 15 PKKSRSDLAIYAMVTATAVLSYVNSLHGD 43
          P  +  DL+++ + T T++L     LHGD
Sbjct: 36 PHYNTKDLSLFYLKTTTSILDLHGRLHGD 64


>11_04_0136 -
           13849051-13849181,13850649-13851047,13851372-13851463,
           13851723-13851928,13852041-13852133,13852261-13852317,
           13852410-13852538,13882612-13882707
          Length = 400

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 36  YVNSLHGDFVHDDIPAVVT 54
           Y  ++HG FV DD P+ VT
Sbjct: 291 YDRAVHGGFVVDDAPSAVT 309


>11_04_0134 -
           13812569-13812699,13814167-13814565,13814890-13814981,
           13815241-13815446,13815559-13815651,13815779-13815835,
           13815928-13816056,13819704-13820024
          Length = 475

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 36  YVNSLHGDFVHDDIPAVVT 54
           Y  ++HG FV DD P+ VT
Sbjct: 366 YDRAVHGGFVVDDAPSAVT 384


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,469
Number of Sequences: 37544
Number of extensions: 98507
Number of successful extensions: 237
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 231
Number of HSP's gapped (non-prelim): 7
length of query: 95
length of database: 14,793,348
effective HSP length: 70
effective length of query: 25
effective length of database: 12,165,268
effective search space: 304131700
effective search space used: 304131700
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)