GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001305-TA|BGIBMGA001305-PA|undefined
         (95 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical pr...    75   1e-14
AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical ...    74   1e-14
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    27   2.0  
Z68880-9|CAA93099.1|  255|Caenorhabditis elegans Hypothetical pr...    26   3.5  
Z68879-12|CAA93091.1|  255|Caenorhabditis elegans Hypothetical p...    26   3.5  
Z54216-4|CAA90947.1|  421|Caenorhabditis elegans Hypothetical pr...    25   6.1  
AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical ...    25   6.1  

>U40060-5|AAA81143.2|  690|Caenorhabditis elegans Hypothetical
           protein F38B6.6 protein.
          Length = 690

 Score = 74.5 bits (175), Expect = 1e-14
 Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 11  DEHPPKKSRSD-LAIYAMVTATAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFL 69
           D  P +K RS  +    ++ + +++ Y++ L GDFV DD  ++V N  V G + L Q+F 
Sbjct: 17  DRSPKEKGRSQGIRNLLILISLSIIPYLSCLGGDFVFDDAESIVNNPIVNGKDPLLQIFS 76

Query: 70  DDFWGSPMADVNSHKSYRPLTTLSF 94
            DFWG  ++  NSHKSYRP+TT +F
Sbjct: 77  RDFWGRSISSSNSHKSYRPVTTFTF 101


>AF016427-4|AAB65353.1|  774|Caenorhabditis elegans Hypothetical
          protein F32D1.3 protein.
          Length = 774

 Score = 74.1 bits (174), Expect = 1e-14
 Identities = 35/72 (48%), Positives = 48/72 (66%), Gaps = 1/72 (1%)

Query: 25 YAMVTATAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFL-DDFWGSPMADVNSH 83
          Y +V   A + Y  +L+ DFV+DD PA++TN DV+G    + L + +DFWG+P+    SH
Sbjct: 23 YLLVALFASIVYRITLNADFVYDDRPAILTNDDVLGRTPWRSLIVHNDFWGNPIGLQGSH 82

Query: 84 KSYRPLTTLSFR 95
          KSYRPL T SFR
Sbjct: 83 KSYRPLITASFR 94


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 11/47 (23%), Positives = 26/47 (55%), Gaps = 2/47 (4%)

Query: 27  MVTATAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFLDDFW 73
           ++ A  ++ Y+  +HGDF++     +  N D+ G   + ++ +D +W
Sbjct: 59  VILAGVLILYITVVHGDFIYRSY--LTLNRDLTGLALIIEVKIDLWW 103


>Z68880-9|CAA93099.1|  255|Caenorhabditis elegans Hypothetical
           protein K08F4.9 protein.
          Length = 255

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 20  SDLAIYAMVTATAVLSYVNSLHGDFVHDDIPAVVTN 55
           + L  Y M +  A+LS+  S+  DF   +IP ++TN
Sbjct: 170 NSLLAYKM-SKVAMLSFSRSMAADFKRLEIPVLITN 204


>Z68879-12|CAA93091.1|  255|Caenorhabditis elegans Hypothetical
           protein K08F4.9 protein.
          Length = 255

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 20  SDLAIYAMVTATAVLSYVNSLHGDFVHDDIPAVVTN 55
           + L  Y M +  A+LS+  S+  DF   +IP ++TN
Sbjct: 170 NSLLAYKM-SKVAMLSFSRSMAADFKRLEIPVLITN 204


>Z54216-4|CAA90947.1|  421|Caenorhabditis elegans Hypothetical
           protein T24H10.5 protein.
          Length = 421

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 72  FWGSPMADVNSHKSYRPLTTLS 93
           FW   +A + S K+YR + TLS
Sbjct: 344 FWADCIAKLTSQKAYRSVRTLS 365


>AL032631-9|CAA21575.2|  893|Caenorhabditis elegans Hypothetical
           protein Y106G6H.7 protein.
          Length = 893

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 2/42 (4%)

Query: 46  HDDIPAVVTNGDVVGTNSLKQLFL--DDFWGSPMADVNSHKS 85
           H DI  ++   +V+GT S KQLF   +    +P A+ +SH++
Sbjct: 375 HLDINPLLEKQNVLGTASRKQLFRFENTACATPNANSSSHRT 416


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.132    0.390 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,314,202
Number of Sequences: 27539
Number of extensions: 83018
Number of successful extensions: 178
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 172
Number of HSP's gapped (non-prelim): 7
length of query: 95
length of database: 12,573,161
effective HSP length: 69
effective length of query: 26
effective length of database: 10,672,970
effective search space: 277497220
effective search space used: 277497220
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)