Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001305-TA|BGIBMGA001305-PA|undefined
(95 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g17030.1 68416.m02174 expressed protein 33 0.029
At2g12480.1 68415.m01349 serine carboxypeptidase S10 family prot... 27 1.9
At3g45240.1 68416.m04882 protein kinase family protein contains ... 27 2.5
At1g53165.1 68414.m06023 protein kinase, putative similar to ser... 27 2.5
At5g60550.1 68418.m07592 protein kinase family protein contains ... 26 3.3
At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containi... 26 3.3
At4g27540.1 68417.m03956 prenylated rab acceptor (PRA1) protein-... 26 3.3
At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3) ident... 26 3.3
At1g78380.1 68414.m09134 glutathione S-transferase, putative sim... 26 3.3
At1g17180.1 68414.m02094 glutathione S-transferase, putative Sec... 26 3.3
At1g33960.1 68414.m04209 avirulence-responsive protein / avirule... 25 5.7
At4g05330.1 68417.m00815 zinc finger and C2 domain protein, puta... 25 7.6
At3g49020.1 68416.m05355 F-box family protein contains F-box dom... 25 7.6
At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DN... 25 7.6
>At3g17030.1 68416.m02174 expressed protein
Length = 648
Score = 33.1 bits (72), Expect = 0.029
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 49 IPAVVTNGDVVGTNSLKQLFLDDFWGSPMADVNSHKSYRPL 89
+ AV+ N DV+ ++ L L DFW S D+ H+ Y L
Sbjct: 141 LEAVIINADVLPGTNIFMLTLGDFWSSNTIDLYLHRRYYEL 181
>At2g12480.1 68415.m01349 serine carboxypeptidase S10 family protein
similar to Serine carboxypeptidase II precursor
(Carboxypeptidase D) (CP-MII) (SP:P08818) [Hordeum
vulgare]
Length = 442
Score = 27.1 bits (57), Expect = 1.9
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 17 KSRSDLAIYAMVTATAVLSYVNSLH 41
K+ S+ IYA+V ++ + Y+NS H
Sbjct: 252 KNMSNACIYAIVESSVLTEYINSYH 276
>At3g45240.1 68416.m04882 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 396
Score = 26.6 bits (56), Expect = 2.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Query: 38 NSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFLDD 71
N +HGD D++ T +G S+ Q+F DD
Sbjct: 234 NVIHGDIKPDNLLVTSTGRVKIGDFSVSQVFKDD 267
>At1g53165.1 68414.m06023 protein kinase, putative similar to
serine/threonine protein kinase 24 [Homo sapiens]
SWISS-PROT:Q9Y6E0
Length = 1007
Score = 26.6 bits (56), Expect = 2.5
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 40 LHGDFVHDDIP-AVVTNGDVVGTNSLKQLFLDDFWGSPMADVNSHKSYRPLTT 91
L+G + P + +T V T S + F D W S +D +S SY P T+
Sbjct: 54 LNGRLLPHSFPTSTITTRSVSRTTS-ENTFRSDSWSSRSSDSSSPTSYTPRTS 105
>At5g60550.1 68418.m07592 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 407
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 27 MVTATAVLSYVNSLHGDFVHDDIPAVVTNGDV-VGTNSLKQLFLDD 71
+VT L + +HGD D++ V ++G V +G S+ Q+F DD
Sbjct: 222 IVTGLMYLHAHDVIHGDIKPDNL-LVTSSGTVKIGDFSVSQVFKDD 266
>At5g27110.1 68418.m03236 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 691
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 38 NSLHGDFVHDDIPAVVTNGDVVGTNSLKQLF 68
N LHG F+H + V N D+ SL L+
Sbjct: 324 NLLHGKFIHGYVIRSVVNADIYVNCSLIDLY 354
>At4g27540.1 68417.m03956 prenylated rab acceptor (PRA1)
protein-related contains Pfam profile PF03208: PRA1
family protein
Length = 241
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 18 SRSDLAIYAMVTATAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFLDDFWG 74
S + ++ A T+ A V+S+ G F + +VT ++ N +L DDF G
Sbjct: 43 SSASVSSSAAATSAASDDVVSSITGGFFASLLSRLVTVSSLLTINPFSKLSADDFSG 99
>At3g59740.1 68416.m06665 receptor lectin kinase 3 (lecRK3)
identical to receptor lectin kinase 3 [Arabidopsis
thaliana] gi|4100060|gb|AAD00733
Length = 659
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 27 MVTATAVLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFLDDFWGSPMADVNSHKSY 86
+V + S ++ +G+F+ ++ A NG + TN+ K + F +P+ NS S+
Sbjct: 10 LVLLLTLFSSTHNSNGNFLMEEAAAAGLNGYCLLTNTTKHSYGQAFNNTPVPIKNSSFSF 69
>At1g78380.1 68414.m09134 glutathione S-transferase, putative
similar to glutathione transferase GI:2853219 from
[Carica papaya]
Length = 219
Score = 26.2 bits (55), Expect = 3.3
Identities = 8/29 (27%), Positives = 17/29 (58%)
Query: 45 VHDDIPAVVTNGDVVGTNSLKQLFLDDFW 73
+H IP ++ NG V + ++ ++D+ W
Sbjct: 50 IHKKIPVLIHNGKPVNESIIQVQYIDEVW 78
>At1g17180.1 68414.m02094 glutathione S-transferase, putative
Second of three repeated putative glutathione
transferases. 72% identical to glutathione transferase
[Arabidopsis thaliana] (gi|4006934). Location of ests
191A10T7 (gb|R90188) and 171N13T7 (gb|R65532)
Length = 221
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 45 VHDDIPAVVTNGDVVGTNSLKQLFLDDFWGS 75
VH IP ++ NG+ V + ++ ++D+ W S
Sbjct: 50 VHKKIPVLIHNGNPVCESLIQIEYIDEVWPS 80
>At1g33960.1 68414.m04209 avirulence-responsive protein / avirulence
induced gene (AIG1) identical to AIG1 (exhibits RPS2-
and avrRpt2-dependent induction early after infection
with Pseudomonas) SP:U40856 [Arabidopsis thaliana]
(Plant Cell 8 (2), 241-249 (1996))
Length = 353
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 33 VLSYVNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFLDDFWGSPMAD 79
VLS + L G + D + V T GDV+ + + L+D+ G M D
Sbjct: 147 VLSTLQVLFGSKIVDYLIVVFTGGDVLEDDGMT---LEDYLGDNMPD 190
>At4g05330.1 68417.m00815 zinc finger and C2 domain protein,
putative similar to zinc finger and C2 domain protein
GI:9957238 from [Arabidopsis thaliana]
Length = 336
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 47 DDIPAVVTNGDVVGTNSLKQLFLDDFWGSPMADVNSHKSYR 87
+++ +++ G NS+ + FL D P DVN + R
Sbjct: 78 EEVDSMIEIGGNASANSIYEAFLPDTCSKPGPDVNHDQRMR 118
>At3g49020.1 68416.m05355 F-box family protein contains F-box domain
Pfam:PF00646
Length = 447
Score = 25.0 bits (52), Expect = 7.6
Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 18 SRSDLAIYAMVTATAVLSY---VNSLHGDFVHDDIPAVVTNGDVVGTNSLKQLFLDDFWG 74
S DL ++ T T V SY V SL ++DD G V+ SLK L +D F G
Sbjct: 195 SLEDLVVHRHST-TDVESYTIAVPSLQRLTIYDDYYGEGVGGYVINAPSLKYLNIDGFNG 253
>At3g15950.1 68416.m02017 DNA topoisomerase-related similar to DNA
topoisomerase IV subunit A (GI:26454107) [Mycoplasma
penetrans]
Length = 772
Score = 25.0 bits (52), Expect = 7.6
Identities = 11/12 (91%), Positives = 11/12 (91%)
Query: 61 TNSLKQLFLDDF 72
TNSLKQL LDDF
Sbjct: 355 TNSLKQLNLDDF 366
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.132 0.390
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,220,762
Number of Sequences: 28952
Number of extensions: 79154
Number of successful extensions: 177
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 14
length of query: 95
length of database: 12,070,560
effective HSP length: 69
effective length of query: 26
effective length of database: 10,072,872
effective search space: 261894672
effective search space used: 261894672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
- SilkBase 1999-2023 -