Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001304-TA|BGIBMGA001304-PA|undefined
         (114 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    26   1.7  
SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr 3|||Ma...    24   5.2  
SPMIT.03 |||mitochondrial DNA binding endonuclease|Schizosacchar...    24   5.2  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    24   5.2  
SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual      24   6.8  
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    24   6.8  
SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit S23...    24   6.8  

>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 1.7
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 1   MRANGLFDKHLLIDYRESYLGNVNTSPDTFCNLTNGRACADEILRNDQSCYLRS 54
           + + G F  HL  ++     G   + P      +NG+   + +LR DQ  Y R+
Sbjct: 286 INSKGEFQVHLKKNFEWKTRGTKYSLPKPVHGTSNGKGKKNPVLREDQPEYQRA 339


>SPCC320.04c |||GTPase Gem1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 630

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 86  HTGFVTDGGVNNTSESKGVRNTVTTNK 112
           + GF TDG  +NT   K +R  V+ N+
Sbjct: 386 YLGFDTDGRGHNTDALKVMRKRVSQNR 412


>SPMIT.03 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial||Partial|Manual
          Length = 323

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 10/25 (40%), Positives = 16/25 (64%)

Query: 90  VTDGGVNNTSESKGVRNTVTTNKVS 114
           ++ G + N   S+ +RN +TT KVS
Sbjct: 47  ISAGNLLNKGTSETLRNEITTKKVS 71


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 24.2 bits (50), Expect = 5.2
 Identities = 13/49 (26%), Positives = 22/49 (44%)

Query: 66  EIIDAVQVKLGGYFTKNNWNHTGFVTDGGVNNTSESKGVRNTVTTNKVS 114
           E + +V+  +     K +   T  +TD G  + S + G  N  TT+  S
Sbjct: 238 ESLKSVESIISNLENKESTTATSTLTDAGFGDKSSTAGKHNVETTSPPS 286


>SPAC9E9.08 |rad26||ATRIP|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 2   RANGLFDK-HLLIDYRESYLGNVNTSPDTFCNLT 34
           ++N L  K ++LID+   YL     S D F N+T
Sbjct: 362 KSNFLDSKFYVLIDFLYLYLSIARESADDFANIT 395


>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 63   LCLEIIDAVQVKLGGYFTKNNWNHTGFVTDGGVN 96
            L +++ DA+      Y ++ N +HT  V D  V+
Sbjct: 1571 LSMDLQDALNAYFNNYVSEENRSHTVLVLDKSVH 1604


>SPBC29A3.15c |rsm23||mitochondrial ribosomal protein subunit
           S23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 476

 Score = 23.8 bits (49), Expect = 6.8
 Identities = 7/30 (23%), Positives = 18/30 (60%)

Query: 78  YFTKNNWNHTGFVTDGGVNNTSESKGVRNT 107
           Y++ + + HTG    G ++++S  +  +N+
Sbjct: 48  YYSSSQYQHTGRPVGGNIHSSSNQQRQKNS 77


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,925
Number of Sequences: 5004
Number of extensions: 21823
Number of successful extensions: 42
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 7
length of query: 114
length of database: 2,362,478
effective HSP length: 64
effective length of query: 50
effective length of database: 2,042,222
effective search space: 102111100
effective search space used: 102111100
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 48 (23.4 bits)