GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001304-TA|BGIBMGA001304-PA|undefined
         (114 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1220 - 28505306-28508497                                         27   2.7  
06_03_1217 - 28484007-28487237                                         27   2.7  
10_08_1043 + 22524322-22524346,22524931-22525028,22525287-225253...    27   3.6  
12_02_0027 + 12427525-12427698,12430082-12430150,12430763-124308...    27   4.7  
04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402     27   4.7  
06_03_1219 - 28491185-28494415                                         26   6.2  
01_06_0910 - 32922459-32922646,32922725-32922823,32923371-329235...    26   6.2  
02_04_0076 - 19486360-19488723                                         26   8.2  
01_05_0379 + 21630223-21631188                                         26   8.2  

>06_03_1220 - 28505306-28508497
          Length = 1063

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 62  GLCLEIIDAVQVKLGGYFTKNNWNHTGFVTDGGVNNTS 99
           GL LE++D     L G F    W HT  +     +N S
Sbjct: 147 GLSLEVLDVSSNLLAGQFPSAIWEHTPRLVSLNASNNS 184


>06_03_1217 - 28484007-28487237
          Length = 1076

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 62  GLCLEIIDAVQVKLGGYFTKNNWNHTGFVTDGGVNNTS 99
           GL LE++D     L G F    W HT  +     +N S
Sbjct: 155 GLSLEVLDVSSNLLAGQFPSAIWEHTPRLVSLNASNNS 192


>10_08_1043 +
          22524322-22524346,22524931-22525028,22525287-22525384,
          22525878-22525935,22526642-22526743,22526840-22526901,
          22527441-22527519,22527669-22527788,22527869-22527982,
          22528749-22528883
          Length = 296

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 12 LIDYRESYLGNVNTSPDTFCNLTNG 36
          L+DYR SY+GN++   D    L  G
Sbjct: 70 LVDYRNSYVGNISIFQDMEQKLQQG 94


>12_02_0027 +
           12427525-12427698,12430082-12430150,12430763-12430823,
           12431147-12431264,12431346-12431422,12432881-12432996,
           12433227-12433661
          Length = 349

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/49 (32%), Positives = 20/49 (40%)

Query: 19  YLGNVNTSPDTFCNLTNGRACADEILRNDQSCYLRSKYAVKFTGLCLEI 67
           + G   T P     L  GR  A     +  S YLR  Y V+F G  L +
Sbjct: 181 FSGETFTMPPAPLGLRCGRPKASFTYWSSYSVYLRGPYLVEFEGRVLSV 229


>04_04_1565 - 34451411-34451875,34454077-34455249,34455340-34455402
          Length = 566

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 24  NTSPDTFCNLTNGRACADEILRNDQSCYLRSKYAVKFTGLCLEIIDAVQVKLGGYFTKN 82
           ++SPDT   L  GR+ + +   + + C+ R  +    T LC + I+     LG Y  +N
Sbjct: 179 SSSPDT---LGFGRSSSTKTPESMKPCFAREWWFDDMTSLCPQTIEKAMRVLGCYGIEN 234


>06_03_1219 - 28491185-28494415
          Length = 1076

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/38 (31%), Positives = 17/38 (44%)

Query: 62  GLCLEIIDAVQVKLGGYFTKNNWNHTGFVTDGGVNNTS 99
           GL L+++D     L G F    W HT  +     +N S
Sbjct: 151 GLSLQVLDVSSNLLAGQFPSAIWEHTPRLVSLNASNNS 188


>01_06_0910 -
           32922459-32922646,32922725-32922823,32923371-32923502,
           32923585-32923743,32924553-32924711,32924897-32925052,
           32925846-32926044
          Length = 363

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 8/11 (72%), Positives = 9/11 (81%)

Query: 84  WNHTGFVTDGG 94
           WNH+GF TD G
Sbjct: 111 WNHSGFATDSG 121


>02_04_0076 - 19486360-19488723
          Length = 787

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)

Query: 20  LGNVNTSPDTFCN-LTNGRACADEILRNDQSCYLRSKYAVKFTGLCLEIIDAVQVKLGGY 78
           LG+V +  +   N + NG   +D +LR+  S YLR     +   LCL + ++ ++  G  
Sbjct: 496 LGDVVSGMEIHSNSIRNGYGTSDSVLRSLISFYLREGQFNQALRLCLSLSNS-EISWGTL 554

Query: 79  F 79
           F
Sbjct: 555 F 555


>01_05_0379 + 21630223-21631188
          Length = 321

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/31 (48%), Positives = 16/31 (51%), Gaps = 3/31 (9%)

Query: 49  SCYLRS---KYAVKFTGLCLEIIDAVQVKLG 76
           SCYL     KYA +   LCLEI      KLG
Sbjct: 286 SCYLEKSDWKYAARDAYLCLEIAAVCLQKLG 316


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,466,240
Number of Sequences: 37544
Number of extensions: 131791
Number of successful extensions: 240
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 234
Number of HSP's gapped (non-prelim): 9
length of query: 114
length of database: 14,793,348
effective HSP length: 73
effective length of query: 41
effective length of database: 12,052,636
effective search space: 494158076
effective search space used: 494158076
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)