Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001304-TA|BGIBMGA001304-PA|undefined
(114 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4) 31 0.30
SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05) 28 1.6
SB_23958| Best HMM Match : FG-GAP (HMM E-Value=0.055) 27 2.8
SB_54391| Best HMM Match : MarR (HMM E-Value=0.95) 27 4.9
SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18) 27 4.9
SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 4.9
SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.4
SB_31529| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.4
SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23) 26 6.4
SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.4
SB_6273| Best HMM Match : MAM (HMM E-Value=0) 26 8.5
>SB_37228| Best HMM Match : DUF1048 (HMM E-Value=1.4)
Length = 964
Score = 30.7 bits (66), Expect = 0.30
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 16 RESYLGNVNTSPDTFCNLTNGRACADEILRNDQSCYLRSKYAVKFTGLCLEIIDA 70
RE+ N N+S D NL NG C L + L+ +Y VK G+ +DA
Sbjct: 35 REANKLNNNSSKDQMTNLANG--CIVVNLAVQEQSLLKLRYVVKLRGIVFHRLDA 87
>SB_53649| Best HMM Match : FKBP_C (HMM E-Value=4.1e-05)
Length = 639
Score = 28.3 bits (60), Expect = 1.6
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 20 LGNVNTSPDTFCNL--TNGRACADEILRNDQSCYLRSKYAVKFTGLCLEIIDAVQVKLGG 77
LG + T C++ N + D+ + C+ K A +F +E DAV+VK G
Sbjct: 72 LGAAILANHTSCDVQDNNYASFCDDQRQRWSICFDSEKNANQFAKQAIETGDAVEVKYTG 131
Query: 78 YFTKNNWNHTGFVTDGGVNNTSESK 102
+ +N F ++ G + T + K
Sbjct: 132 WLLENGNFGKVFDSNAGTDKTFKFK 156
>SB_23958| Best HMM Match : FG-GAP (HMM E-Value=0.055)
Length = 683
Score = 27.5 bits (58), Expect = 2.8
Identities = 11/33 (33%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 46 NDQSCYLRSKYAVKFTGLCLEIIDAVQ-VKLGG 77
+++ C L++ ++V FTGL ++ ++ VK+GG
Sbjct: 87 SNRKCELKNTWSVNFTGLVPHLLREIEGVKIGG 119
>SB_54391| Best HMM Match : MarR (HMM E-Value=0.95)
Length = 837
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 28 DTFCNLTNGRACADEILRNDQSCYLRSKYAVKFTGLCLEIIDAV-QVKLGGYFTKNNWN 85
D CN+ GR I + + SC L S F L EI + + G+F NW+
Sbjct: 758 DRLCNIVIGRMELTPIDKEELSCILTSLNKC-FAALAAEIASPLSEYTRQGHFIMYNWH 815
>SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18)
Length = 899
Score = 26.6 bits (56), Expect = 4.9
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 28 DTFCNLTNGRACADEILRNDQSCYLRSKYAVKFTGLCLEIIDAV-QVKLGGYFTKNNWN 85
D CN+ GR I + + SC L S F L EI + + G+F NW+
Sbjct: 783 DRLCNIVIGRMELTPIDKEELSCILTSLNKC-FAALAAEIASPLSEYTRQGHFIMYNWH 840
>SB_53017| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1488
Score = 26.6 bits (56), Expect = 4.9
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 35 NGRACADEILRNDQSCYLRSKYAVKFTGLCLEIID 69
+GR + + ++C ++ AVK GLC +++D
Sbjct: 818 DGRTYSSTCAMDARACQAQTSIAVKHPGLCRKVLD 852
>SB_51030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 361
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 51 YLRSKYAVKFTGLCLEI 67
YLR ++AVK G CL I
Sbjct: 111 YLRDRFAVKIVGFCLVI 127
>SB_31529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 51 YLRSKYAVKFTGLCLEI 67
YLR ++AVK G CL I
Sbjct: 64 YLRDRFAVKIVGFCLVI 80
>SB_27459| Best HMM Match : fn3 (HMM E-Value=1.4e-23)
Length = 262
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 15 YRESYLGNVNTSPDTFCNLTNGRACADEILRNDQSCYLR-SKYAVKFT 61
YR Y + PD N+T + A E+L D Y+R S YAV FT
Sbjct: 44 YRVCYQASNTPFPDPLLNVTV-ESSATEVLLVDLYKYVRYSIYAVAFT 90
>SB_56407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 26.2 bits (55), Expect = 6.4
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 15 YRESYLGNVNTSPDTFCNLTNGRACADEILRNDQSCYLR-SKYAVKFT 61
YR Y + PD N+T + A E+L D Y+R S YAV FT
Sbjct: 1467 YRVCYQASNTPFPDPLLNVTV-ESSATEVLLVDLYKYVRYSIYAVAFT 1513
>SB_6273| Best HMM Match : MAM (HMM E-Value=0)
Length = 4272
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Query: 70 AVQVKLGGYFTKNNWNHTGFVTDGGVNNTSESKG 103
AVQ K G Y + + FV D GVN+ S+ KG
Sbjct: 1895 AVQCKNGNYVS--SLQVCDFVNDCGVNDDSDEKG 1926
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.406
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,142,843
Number of Sequences: 59808
Number of extensions: 161494
Number of successful extensions: 338
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 334
Number of HSP's gapped (non-prelim): 13
length of query: 114
length of database: 16,821,457
effective HSP length: 73
effective length of query: 41
effective length of database: 12,455,473
effective search space: 510674393
effective search space used: 510674393
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)
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