GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001304-TA|BGIBMGA001304-PA|undefined
         (114 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY061466-1|AAL29014.1|  735|Drosophila melanogaster LD42214p pro...    27   5.9  
AY060298-1|AAL25337.1|  322|Drosophila melanogaster GH14130p pro...    27   5.9  
AE013599-3846|AAM68308.1|  708|Drosophila melanogaster CG3376-PB...    27   5.9  
AE013599-3845|AAF47189.1|  735|Drosophila melanogaster CG3376-PA...    27   5.9  

>AY061466-1|AAL29014.1|  735|Drosophila melanogaster LD42214p
           protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 20  LGNVNTSPDTFCNLTNGRACAD 41
           L  VN SPD  C+   G  CAD
Sbjct: 215 LKRVNLSPDELCSFVIGDGCAD 236


>AY060298-1|AAL25337.1|  322|Drosophila melanogaster GH14130p
          protein.
          Length = 322

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 20 LGNVNTSPDTFCNLTNGRACAD 41
          L  VN SPD  C+   G  CAD
Sbjct: 63 LKRVNLSPDELCSFVIGDGCAD 84


>AE013599-3846|AAM68308.1|  708|Drosophila melanogaster CG3376-PB,
           isoform B protein.
          Length = 708

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 20  LGNVNTSPDTFCNLTNGRACAD 41
           L  VN SPD  C+   G  CAD
Sbjct: 215 LKRVNLSPDELCSFVIGDGCAD 236


>AE013599-3845|AAF47189.1|  735|Drosophila melanogaster CG3376-PA,
           isoform A protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 11/22 (50%), Positives = 12/22 (54%)

Query: 20  LGNVNTSPDTFCNLTNGRACAD 41
           L  VN SPD  C+   G  CAD
Sbjct: 215 LKRVNLSPDELCSFVIGDGCAD 236


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,911,353
Number of Sequences: 52641
Number of extensions: 233736
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 557
Number of HSP's gapped (non-prelim): 4
length of query: 114
length of database: 24,830,863
effective HSP length: 75
effective length of query: 39
effective length of database: 20,882,788
effective search space: 814428732
effective search space used: 814428732
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)