GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001304-TA|BGIBMGA001304-PA|undefined
         (114 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical pr...    26   5.6  
Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical pr...    26   7.4  
U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical pr...    25   9.8  
U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily ass...    25   9.8  
AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidas...    25   9.8  

>Z67738-2|CAA91546.2|  482|Caenorhabditis elegans Hypothetical
           protein W03G11.3 protein.
          Length = 482

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 73  VKLGGYFTKNNWNHTGFVTDGGVNNT 98
           V  G YF++  W H  F+ DG  N T
Sbjct: 159 VHFGLYFSQFEWFHPMFLDDGKFNTT 184


>Z75714-3|CAB00060.1| 1149|Caenorhabditis elegans Hypothetical
           protein ZC434.5 protein.
          Length = 1149

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 21/81 (25%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 7   FDKHLLIDYRESYLGNVNTSPDTFCNLTNGRAC-ADEILRNDQSCYLRSKYAVKFTGLCL 65
           F+K ++      Y    +TSP     LT+  +     +  + ++  + SK   K   L L
Sbjct: 491 FNKKVIDPVAPRYTALDSTSPLVSIELTDSISDDTSNVSLHPKNAEIGSKDVHKGKKLLL 550

Query: 66  EIIDAVQVKLGGYFTKNNWNH 86
           E +DA  +K G   T  NW +
Sbjct: 551 EQVDAAALKEGEIVTFVNWGN 571


>U70853-1|AAB09143.2|  439|Caenorhabditis elegans Hypothetical
          protein M01H9.2 protein.
          Length = 439

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 30 FCNLTNGRACADEI-LRNDQSCYLRSKYAVKF 60
          FC+ TN  +C D+    N   C +R  YA+ +
Sbjct: 10 FCSFTNASSCQDKSPYCNPNDCEVRPGYAMVY 41


>U41534-1|AAB47593.3| 1437|Caenorhabditis elegans Temporarily
          assigned gene nameprotein 213 protein.
          Length = 1437

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 6  LFDKHLLIDYRESYLGNVNTSPD---TFCNLTNGRACADEILRNDQSCYLRSKYA 57
          L D  +L +    +  N +TS +   +F NL       +EILR +  C+ +  ++
Sbjct: 42 LIDVLVLTEPESEFADNASTSKENFESFVNLLTNTIIPEEILRLELDCFKKDDHS 96


>AF039716-4|AAB96739.1|  616|Caenorhabditis elegans Aminopeptidase p
           protein 1 protein.
          Length = 616

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 34  TNGRACADEILRNDQSCYLRSKYAVKFTGLCLEIIDAV 71
           T G   A ++L  +   Y + KY ++    C E ++AV
Sbjct: 509 TGGELHASQVLTIEPGFYAKEKYGIRIEN-CYETVEAV 545


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.134    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,032,741
Number of Sequences: 27539
Number of extensions: 118566
Number of successful extensions: 221
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 219
Number of HSP's gapped (non-prelim): 6
length of query: 114
length of database: 12,573,161
effective HSP length: 72
effective length of query: 42
effective length of database: 10,590,353
effective search space: 444794826
effective search space used: 444794826
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)